Variant report

Variant	rs61646015
Chromosome Location	chr2:150948213-150948214
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16827753	0.81[EUR][1000 genomes]
rs16827839	1.00[ASN][1000 genomes]
rs16827847	1.00[ASN][1000 genomes]
rs16827853	0.83[ASN][1000 genomes]
rs73000474	0.81[EUR][1000 genomes]
rs73966735	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73968325	1.00[ASN][1000 genomes]
rs895410	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005441	chr2:150457624-151060247	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv875285	chr2:150904671-150985765	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:150939200-150952200	Weak transcription	Ovary	ovary
2	chr2:150945400-150952000	Weak transcription	Pancreas	Pancrea
3	chr2:150947800-150949000	Enhancers	Fetal Lung	lung
4	chr2:150947800-150949600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:150948000-150948400	ZNF genes & repeats	Aorta	Aorta
6	chr2:150948000-150948400	Enhancers	HSMM	muscle
7	chr2:150948000-150948600	Enhancers	Fetal Muscle Leg	muscle
8	chr2:150948000-150948600	Enhancers	Psoas Muscle	Psoas
9	chr2:150948000-150949000	Enhancers	Brain Germinal Matrix	brain
10	chr2:150948000-150949200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:150948000-150949200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:150948000-150949200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:150948000-150949400	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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