Variant report

Variant	rs61648214
Chromosome Location	chr7:120432398-120432399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:120365276..120366203-chr7:120431867..120432670,2	MCF-7	breast:
2	chr7:120431821..120432727-chr7:120977262..120978044,2	K562	blood:
3	chr7:120432158..120432781-chr7:120497321..120498216,2	MCF-7	breast:
4	chr7:120431872..120432675-chr7:120721154..120721746,2	MCF-7	breast:
5	chr7:120429497..120433705-chr7:120588481..120592283,5	MCF-7	breast:
6	chr7:120431789..120432669-chr7:120497274..120498124,6	K562	blood:
7	chr7:120431064..120435276-chr7:120437934..120440347,4	K562	blood:
8	chr7:120431634..120433947-chr7:120435928..120437734,2	K562	blood:
9	chr7:120431987..120432719-chr7:120580875..120581724,2	MCF-7	breast:
10	chr3:182537385..182537919-chr7:120431797..120432504,2	MCF-7	breast:
11	chr7:120426535..120428741-chr7:120429958..120433038,3	K562	blood:
12	chr7:120431789..120432774-chr7:120580898..120581834,5	MCF-7	breast:
13	chr7:120431798..120432733-chr7:120748046..120748607,2	K562	blood:
14	chr7:120431063..120433784-chr7:120719676..120721817,4	K562	blood:
15	chr7:120365224..120365804-chr7:120432177..120432677,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106025	Chromatin interaction
ENSG00000071243	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12531045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57578616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969403	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818826	chr7:120405335-120622836	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120423000-120449200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:120425600-120433200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:120425600-120434400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:120425600-120434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:120425600-120470400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:120425800-120432400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:120425800-120434800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:120425800-120437600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:120425800-120454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:120426600-120442000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:120427400-120466000	Weak transcription	Fetal Stomach	stomach
12	chr7:120427800-120432400	Weak transcription	Fetal Kidney	kidney
13	chr7:120427800-120438400	Weak transcription	Aorta	Aorta
14	chr7:120428400-120440400	Weak transcription	Fetal Intestine Small	intestine
15	chr7:120429200-120432400	Weak transcription	Gastric	stomach
16	chr7:120429200-120445600	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:120429400-120434000	Weak transcription	Left Ventricle	heart
18	chr7:120429400-120437200	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:120430200-120437200	Weak transcription	Liver	Liver
20	chr7:120430400-120468200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:120432000-120432600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:120432000-120432600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr7:120432000-120432600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:120432000-120432600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr7:120432000-120432600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr7:120432000-120432800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:120432000-120432800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr7:120432000-120433200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr7:120432000-120433400	Enhancers	Fetal Heart	heart
30	chr7:120432200-120432400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr7:120432200-120432400	Enhancers	Right Ventricle	heart
32	chr7:120432200-120432600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:120432200-120432600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:120432200-120432600	Enhancers	Fetal Intestine Large	intestine
35	chr7:120432200-120432600	Enhancers	Lung	lung
36	chr7:120432200-120432600	Enhancers	Placenta Amnion	Placenta Amnion
37	chr7:120432200-120432600	Enhancers	Right Atrium	heart
38	chr7:120432200-120432600	Enhancers	Spleen	Spleen
39	chr7:120432200-120432800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:120432200-120432800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:120432200-120433600	Enhancers	HUVEC	blood vessel

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