Variant report

Variant	rs61649426
Chromosome Location	chr7:105532116-105532117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105529246..105532232-chr7:105533599..105537801,4	K562	blood:
2	chr7:105528969..105534140-chr7:105534279..105538473,8	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11764951	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765906	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11769228	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17152250	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28562194	0.87[ASN][1000 genomes]
rs4727632	0.87[ASN][1000 genomes]
rs4727633	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4727634	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56758628	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60168905	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60248408	0.88[ASN][1000 genomes]
rs66473879	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72603542	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv464669	chr7:105504201-105533735	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv608070	chr7:105504201-105533735	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105518400-105562800	Weak transcription	Aorta	Aorta
2	chr7:105518800-105548200	Weak transcription	Right Atrium	heart
3	chr7:105519000-105532400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:105519000-105542600	Weak transcription	A549	lung
5	chr7:105519400-105532400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:105519800-105550600	Weak transcription	NHLF	lung
7	chr7:105520000-105535400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:105520000-105545600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:105520000-105549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:105520000-105549600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:105520200-105550400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:105522000-105537200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:105522400-105537200	Weak transcription	Gastric	stomach
14	chr7:105522400-105549600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:105524400-105536000	Weak transcription	HepG2	liver
16	chr7:105524800-105533200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:105525800-105542400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:105526000-105541600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:105526200-105532600	Weak transcription	Left Ventricle	heart
20	chr7:105526200-105536200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:105526200-105537200	Weak transcription	Fetal Brain Female	brain
22	chr7:105526200-105537200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:105526200-105537400	Weak transcription	Fetal Lung	lung
24	chr7:105526400-105547200	Weak transcription	Adipose Nuclei	Adipose
25	chr7:105527800-105547000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:105527800-105547000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:105528200-105537200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr7:105528200-105537200	Weak transcription	Stomach Mucosa	stomach
29	chr7:105528400-105532800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr7:105528400-105537200	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:105528600-105532800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:105528600-105532800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:105528600-105534400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:105528600-105535600	Weak transcription	Pancreas	Pancrea
35	chr7:105528600-105537200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:105528600-105541000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:105528600-105541800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:105529200-105535400	Weak transcription	Ovary	ovary
39	chr7:105530800-105532800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr7:105530800-105533200	Strong transcription	Colon Smooth Muscle	Colon
41	chr7:105530800-105536400	Strong transcription	NHDF-Ad	bronchial
42	chr7:105531000-105533000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:105531000-105533200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:105531000-105533400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:105531400-105533200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:105531400-105533600	Strong transcription	Fetal Intestine Large	intestine
47	chr7:105531400-105533800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:105531400-105533800	Weak transcription	HMEC	breast
49	chr7:105531400-105534800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:105531400-105535000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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