Variant report

Variant	rs616581
Chromosome Location	chr11:108070310-108070311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108069760..108073247-chr11:108087565..108091000,4	K562	blood:
2	chr11:108063429..108067423-chr11:108068069..108071362,4	K562	blood:
3	chr11:107993563..107996338-chr11:108068395..108070955,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs184471	1.00[YRI][hapmap]
rs227059	1.00[YRI][hapmap]
rs227071	0.86[AFR][1000 genomes]
rs3017874	1.00[YRI][hapmap]
rs529632	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs591654	1.00[AFR][1000 genomes]
rs641252	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108009200-108071000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:108010600-108071200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:108017000-108075000	Strong transcription	Dnd41	blood
4	chr11:108024800-108070400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:108026200-108072200	Strong transcription	Fetal Thymus	thymus
6	chr11:108026800-108071000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:108032600-108075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:108040400-108074000	Weak transcription	Fetal Brain Male	brain
9	chr11:108041600-108074000	Weak transcription	Small Intestine	intestine
10	chr11:108043400-108070600	Weak transcription	A549	lung
11	chr11:108050000-108074800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:108053800-108075600	Weak transcription	Fetal Heart	heart
13	chr11:108057000-108070600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:108057600-108075000	Weak transcription	Colonic Mucosa	Colon
15	chr11:108060000-108070600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:108060000-108070800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:108060000-108077000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:108060000-108077000	Weak transcription	NHLF	lung
19	chr11:108060200-108076800	Weak transcription	Hela-S3	cervix
20	chr11:108061800-108075000	Weak transcription	Ovary	ovary
21	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:108063400-108070400	Strong transcription	Primary T cells from cord blood	blood
23	chr11:108063400-108077200	Weak transcription	NHDF-Ad	bronchial
24	chr11:108065200-108074400	Weak transcription	Fetal Kidney	kidney
25	chr11:108065400-108075400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
26	chr11:108067200-108073200	Weak transcription	HUVEC	blood vessel
27	chr11:108067200-108073600	Weak transcription	Fetal Lung	lung
28	chr11:108067200-108076800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:108067400-108076400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:108067400-108077000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:108067600-108070600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:108067600-108073000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:108067600-108073400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:108067600-108076800	Weak transcription	Adipose Nuclei	Adipose
35	chr11:108067800-108070400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:108067800-108070600	Weak transcription	NH-A	brain
37	chr11:108067800-108070800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr11:108067800-108074400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:108067800-108074600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:108068000-108070400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:108068000-108074200	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr11:108068000-108074800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
43	chr11:108068000-108075000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:108068200-108070600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:108068200-108074000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:108068400-108073200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr11:108068800-108074600	Weak transcription	HepG2	liver
48	chr11:108068800-108074800	Weak transcription	Liver	Liver
49	chr11:108069000-108071000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:108069000-108074800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood

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