Variant report

Variant	rs616606
Chromosome Location	chr15:41172247-41172248
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41164548..41167013-chr15:41169741..41172530,3	K562	blood:
2	chr15:41136155..41137886-chr15:41171120..41173235,2	MCF-7	breast:
3	chr15:41149992..41152598-chr15:41170919..41172722,2	K562	blood:
4	chr15:41162670..41167834-chr15:41168515..41173358,14	MCF-7	breast:
5	chr15:41164565..41167944-chr15:41168228..41172256,5	K562	blood:
6	chr15:41171533..41175197-chr15:41185717..41188518,3	K562	blood:
7	chr15:41148133..41159834-chr15:41169228..41175193,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166145	Chromatin interaction
ENSG00000261183	Chromatin interaction
ENSG00000104140	Chromatin interaction
ENSG00000264256	Chromatin interaction
ENSG00000104142	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11070298	0.85[EUR][1000 genomes]
rs11070299	0.85[EUR][1000 genomes]
rs11070301	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11070303	0.81[EUR][1000 genomes]
rs11070304	0.92[EUR][1000 genomes]
rs11635602	0.86[ASN][1000 genomes]
rs11856227	0.85[EUR][1000 genomes]
rs12101494	0.89[EUR][1000 genomes]
rs12148515	0.81[EUR][1000 genomes]
rs12148523	0.87[EUR][1000 genomes]
rs12903603	0.80[EUR][1000 genomes]
rs16971157	0.83[EUR][1000 genomes]
rs1814692	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2279578	0.85[EUR][1000 genomes]
rs2412571	0.85[EUR][1000 genomes]
rs2445490	0.81[ASN][1000 genomes]
rs3100810	0.86[ASN][1000 genomes]
rs4244581	0.83[EUR][1000 genomes]
rs4384588	0.85[EUR][1000 genomes]
rs4923885	0.85[EUR][1000 genomes]
rs4923886	0.85[EUR][1000 genomes]
rs4923887	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4924509	0.94[EUR][1000 genomes]
rs601436	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601696	0.86[ASN][1000 genomes]
rs615987	0.86[ASN][1000 genomes]
rs617377	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs618892	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618916	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677273	0.86[ASN][1000 genomes]
rs682130	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs687949	0.86[ASN][1000 genomes]
rs7172280	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7175294	0.84[EUR][1000 genomes]
rs8024861	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024961	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8028660	0.85[EUR][1000 genomes]
rs8042095	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569228	chr15:41106485-41194151	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
7	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41166800-41172400	Enhancers	Placenta	Placenta
2	chr15:41170800-41172600	Enhancers	K562	blood
3	chr15:41172000-41172400	Weak transcription	Stomach Mucosa	stomach
4	chr15:41172000-41172600	Enhancers	Hela-S3	cervix
5	chr15:41172000-41184000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links