Variant report

Variant	rs61660810
Chromosome Location	chr17:20170608-20170609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:20170501..20172130-chr17:20175746..20177689,2	MCF-7	breast:
2	chr17:20170600..20173338-chr17:20176185..20177778,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11868429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12051844	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12051865	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16959946	0.94[ASN][1000 genomes]
rs16960700	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16960715	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16960717	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16960730	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16960735	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16964352	0.90[ASN][1000 genomes]
rs1971043	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1971044	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28550747	0.92[ASN][1000 genomes]
rs3751979	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5025290	0.88[ASN][1000 genomes]
rs57110692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61141789	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6587060	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6587061	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6587218	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6587221	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7207458	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7211948	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7213349	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7213816	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7215097	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7215432	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7218859	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73299658	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73301548	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73309111	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73981849	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8076627	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8077051	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8077852	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9895177	0.80[ASN][1000 genomes]
rs9896190	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9899514	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901102	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9905976	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9908418	0.80[ASN][1000 genomes]
rs9911605	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9913394	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9914219	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9941362	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9941376	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1067100	chr17:20007480-20464520	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv543260	chr17:20007480-20464520	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv428669	chr17:20071969-20245033	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1064854	chr17:20086562-20225751	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2761953	chr17:20086562-20225763	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1063833	chr17:20088333-20206601	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv574581	chr17:20088492-20699545	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
12	nsv1062124	chr17:20139384-20206601	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv543261	chr17:20139384-20206601	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1065758	chr17:20141912-20464366	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
15	nsv543262	chr17:20141912-20464366	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
16	nsv1057389	chr17:20158343-20256498	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61660810	AKAP10	cis	Whole Blood	GTEx

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20136400-20209800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:20151600-20170800	Weak transcription	GM12878-XiMat	blood
3	chr17:20151600-20190000	Weak transcription	Colonic Mucosa	Colon
4	chr17:20152800-20176200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:20161800-20180200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr17:20162000-20172600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:20162000-20172800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr17:20162000-20174600	Weak transcription	Thymus	Thymus
9	chr17:20162000-20176600	Weak transcription	Fetal Brain Male	brain
10	chr17:20162000-20187600	Weak transcription	Pancreas	Pancrea
11	chr17:20164000-20172800	Weak transcription	Left Ventricle	heart
12	chr17:20164000-20200200	Weak transcription	Fetal Intestine Large	intestine
13	chr17:20164000-20205600	Weak transcription	Esophagus	oesophagus
14	chr17:20164200-20172600	Weak transcription	Adipose Nuclei	Adipose
15	chr17:20164200-20176200	Weak transcription	Fetal Brain Female	brain
16	chr17:20164200-20200200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr17:20164400-20202200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr17:20164600-20203800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr17:20164600-20204000	Weak transcription	Gastric	stomach
20	chr17:20165000-20173600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr17:20165000-20182000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr17:20165600-20177200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr17:20165800-20171000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:20165800-20180400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr17:20166000-20185000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr17:20166200-20174400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr17:20166600-20174000	Enhancers	Primary T cells from cord blood	blood
28	chr17:20166600-20187400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr17:20167000-20170800	Weak transcription	Fetal Thymus	thymus
30	chr17:20167200-20183200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr17:20167400-20172000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr17:20167400-20174600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr17:20167400-20187600	Weak transcription	A549	lung
34	chr17:20167400-20200200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr17:20167600-20173800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr17:20168000-20177000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr17:20168200-20182000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr17:20168200-20182400	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr17:20168400-20176400	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr17:20169000-20174000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr17:20170000-20170800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr17:20170000-20171000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr17:20170000-20171000	Genic enhancers	Hela-S3	cervix
44	chr17:20170000-20171200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr17:20170000-20171200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr17:20170000-20171200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr17:20170000-20171200	Enhancers	Brain Substantia Nigra	brain
48	chr17:20170000-20171200	Enhancers	Spleen	Spleen
49	chr17:20170000-20171400	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr17:20170000-20171400	Enhancers	HSMM	muscle

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