Variant report

Variant	rs61661053
Chromosome Location	chr8:121896783-121896784
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11984826	1.00[ASN][1000 genomes]
rs11989156	0.86[ASN][1000 genomes]
rs11993392	0.93[ASN][1000 genomes]
rs11993960	0.87[EUR][1000 genomes]
rs11995761	0.93[ASN][1000 genomes]
rs11996249	0.86[ASN][1000 genomes]
rs11997638	0.91[EUR][1000 genomes]
rs13251092	1.00[ASN][1000 genomes]
rs16894376	0.93[ASN][1000 genomes]
rs28769891	0.86[ASN][1000 genomes]
rs34293529	1.00[ASN][1000 genomes]
rs34850551	1.00[ASN][1000 genomes]
rs4598289	1.00[ASN][1000 genomes]
rs7002466	0.87[EUR][1000 genomes]
rs7007837	0.93[ASN][1000 genomes]
rs7812951	0.93[ASN][1000 genomes]
rs7813455	0.93[ASN][1000 genomes]
rs7834754	0.93[ASN][1000 genomes]
rs7834759	0.93[ASN][1000 genomes]
rs7840108	0.86[ASN][1000 genomes]
rs7842019	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891423	chr8:121847643-121994660	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891425	chr8:121875083-122025559	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121895400-121896800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr8:121896400-121897800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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