Variant report

Variant	rs61666152
Chromosome Location	chr11:17969664-17969665
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs211112	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs211124	1.00[AMR][1000 genomes]
rs2468767	1.00[AMR][1000 genomes]
rs2468791	1.00[AMR][1000 genomes]
rs2468835	1.00[AMR][1000 genomes]
rs502969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832079	chr11:17927967-18047743	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17838400-17971600	Weak transcription	Gastric	stomach
2	chr11:17906000-17970200	Weak transcription	Lung	lung
3	chr11:17920600-17976000	Weak transcription	Esophagus	oesophagus
4	chr11:17928600-17970200	Weak transcription	Thymus	Thymus
5	chr11:17934400-18033600	Weak transcription	Small Intestine	intestine
6	chr11:17937600-17977000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:17940000-17976400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:17943600-17975400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:17943800-17992800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:17944000-17975600	Weak transcription	HSMM	muscle
11	chr11:17944000-18026600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:17945000-17974000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:17945200-17974800	Weak transcription	GM12878-XiMat	blood
14	chr11:17945400-17975400	Weak transcription	Pancreas	Pancrea
15	chr11:17945400-18010000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:17945400-18033400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:17945600-17972400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:17946200-17975400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:17948000-17970200	Weak transcription	Spleen	Spleen
20	chr11:17948800-17981400	Weak transcription	Fetal Brain Male	brain
21	chr11:17949400-17969800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:17949600-17972600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:17949600-17974200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:17950200-17975600	Weak transcription	Fetal Stomach	stomach
25	chr11:17953400-17974800	Weak transcription	HSMMtube	muscle
26	chr11:17953400-17975400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:17954400-17972200	Weak transcription	Fetal Intestine Small	intestine
28	chr11:17954400-17975400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:17955400-17978200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:17955600-17974000	Weak transcription	Stomach Mucosa	stomach
31	chr11:17956200-17969800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:17956400-17975400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:17956800-17976800	Weak transcription	HMEC	breast
34	chr11:17957200-17994200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:17959200-18007600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:17961000-18016200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:17962000-17970400	Weak transcription	Left Ventricle	heart
38	chr11:17962400-17972000	Weak transcription	Liver	Liver
39	chr11:17962400-17975600	Weak transcription	Right Ventricle	heart
40	chr11:17962400-17976400	Weak transcription	Brain Angular Gyrus	brain
41	chr11:17963200-17971000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:17963400-17971000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:17963800-17976000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:17964200-17974800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:17964800-17972000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:17965400-17994400	Weak transcription	NH-A	brain
47	chr11:17965800-17972400	Weak transcription	Fetal Intestine Large	intestine
48	chr11:17965800-17974000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:17965800-17974200	Weak transcription	Brain Anterior Caudate	brain
50	chr11:17965800-17974800	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links