Variant report

Variant	rs61668299
Chromosome Location	chr5:126984668-126984669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73339072	1.00[AMR][1000 genomes]
rs73339090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv599663	chr5:126972005-126991456	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv599664	chr5:126974071-127016256	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126979600-126985400	Weak transcription	Ovary	ovary
2	chr5:126981000-126988800	Enhancers	Colon Smooth Muscle	Colon
3	chr5:126981600-126987000	Enhancers	Fetal Stomach	stomach
4	chr5:126981600-126987000	Enhancers	Stomach Smooth Muscle	stomach
5	chr5:126981800-126987000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:126982200-126985600	Weak transcription	Psoas Muscle	Psoas
7	chr5:126983000-126984800	Enhancers	NHEK	skin
8	chr5:126983000-126986800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:126983000-126986800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:126983000-126987200	Enhancers	HMEC	breast
11	chr5:126983200-126988600	Enhancers	Fetal Lung	lung
12	chr5:126983600-126985800	Weak transcription	Left Ventricle	heart
13	chr5:126983800-126986200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:126983800-126986600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:126984000-126984800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:126984000-126985000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:126984000-126985000	Weak transcription	HSMMtube	muscle
18	chr5:126984000-126985600	Weak transcription	Esophagus	oesophagus
19	chr5:126984000-126985600	Weak transcription	Right Atrium	heart
20	chr5:126984200-126986800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:126984400-126985600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:126984400-126986000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr5:126984400-126986200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:126984400-126986600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr5:126984400-126986800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:126984400-126987000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:126984600-126985000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr5:126984600-126986000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr5:126984600-126986000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr5:126984600-126986000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr5:126984600-126986000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr5:126984600-126986000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr5:126984600-126986200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:126984600-126986200	Enhancers	Fetal Brain Male	brain
35	chr5:126984600-126986400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:126984600-126986400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links