Variant report

Variant	rs61687197
Chromosome Location	chr9:73786729-73786730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61198146	0.91[AFR][1000 genomes]
rs73465381	0.82[AFR][1000 genomes]
rs73467727	0.88[AFR][1000 genomes]
rs73467749	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73786200-73787200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:73786200-73787400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:73786400-73786800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73786400-73786800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr9:73786600-73787000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:73786600-73787000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr9:73786600-73788600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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