Variant report

Variant	rs61695559
Chromosome Location	chr2:67899841-67899842
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12465109	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1367462	0.81[EUR][1000 genomes]
rs1991637	0.81[EUR][1000 genomes]
rs2861713	0.81[EUR][1000 genomes]
rs7560271	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834250	chr2:67897722-68051532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3417796	chr2:67897748-67901146	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3417694	chr2:67897748-67901346	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3350211	chr2:67897948-67901146	Genic enhancers Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67893200-67903600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr2:67893600-67903000	Weak transcription	Left Ventricle	heart
3	chr2:67897200-67900400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:67899000-67900000	Enhancers	Right Atrium	heart
5	chr2:67899000-67900200	Enhancers	Right Ventricle	heart
6	chr2:67899200-67900000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:67899200-67900000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:67899200-67900000	ZNF genes & repeats	Fetal Kidney	kidney
9	chr2:67899200-67900200	Active TSS	Fetal Lung	lung
10	chr2:67899400-67900000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:67899400-67900000	Flanking Active TSS	Gastric	stomach
12	chr2:67899400-67900000	Enhancers	Spleen	Spleen
13	chr2:67899600-67901000	Weak transcription	Psoas Muscle	Psoas
14	chr2:67899800-67900000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:67899800-67900000	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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