Variant report

Variant	rs61708249
Chromosome Location	chr5:9376259-9376260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10037736	1.00[EUR][1000 genomes]
rs10051740	1.00[EUR][1000 genomes]
rs10061591	1.00[EUR][1000 genomes]
rs10071937	1.00[EUR][1000 genomes]
rs10073804	1.00[EUR][1000 genomes]
rs10075425	1.00[EUR][1000 genomes]
rs10474843	1.00[EUR][1000 genomes]
rs28421167	1.00[EUR][1000 genomes]
rs28657587	1.00[EUR][1000 genomes]
rs28670316	1.00[EUR][1000 genomes]
rs4541632	1.00[EUR][1000 genomes]
rs4620000	1.00[EUR][1000 genomes]
rs4702619	1.00[EUR][1000 genomes]
rs60138856	1.00[AMR][1000 genomes]
rs60859218	1.00[EUR][1000 genomes]
rs6887329	1.00[EUR][1000 genomes]
rs73034712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034775	1.00[AMR][1000 genomes]
rs73034776	1.00[AMR][1000 genomes]
rs73034781	1.00[AMR][1000 genomes]
rs73034801	1.00[AMR][1000 genomes]
rs73052657	0.84[AFR][1000 genomes]
rs73052659	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052666	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052672	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052674	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052677	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742650	1.00[EUR][1000 genomes]
rs7703053	1.00[EUR][1000 genomes]
rs7703893	1.00[EUR][1000 genomes]
rs7707516	1.00[EUR][1000 genomes]
rs7708290	1.00[EUR][1000 genomes]
rs7711705	1.00[EUR][1000 genomes]
rs7714286	1.00[EUR][1000 genomes]
rs7726447	1.00[EUR][1000 genomes]
rs7727842	1.00[EUR][1000 genomes]
rs805141	0.84[AFR][1000 genomes]
rs805148	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881438	chr5:8728874-9695667	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1016937	chr5:8824417-9402871	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv537638	chr5:8824417-9402871	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv918004	chr5:8824417-9402871	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1015378	chr5:9053542-9617963	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv537640	chr5:9053542-9617963	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1020815	chr5:9135207-9425649	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv498044	chr5:9143754-9402870	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv530183	chr5:9146506-9413373	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv597071	chr5:9182376-9760599	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1032672	chr5:9182409-9843893	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv1035075	chr5:9182584-9843723	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv537641	chr5:9182584-9843723	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv1034637	chr5:9182784-9741743	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv537642	chr5:9182784-9741743	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv1028656	chr5:9196001-9837040	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
17	nsv1016885	chr5:9218932-9575594	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
18	nsv1026078	chr5:9222811-9591290	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv1022137	chr5:9225121-9745434	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
20	nsv537643	chr5:9225121-9745434	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv1022574	chr5:9314645-9647238	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:9357200-9377800	Weak transcription	Fetal Intestine Large	intestine
2	chr5:9358000-9389400	Weak transcription	Brain Substantia Nigra	brain
3	chr5:9359200-9382800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:9369400-9378400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:9370200-9380800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:9370800-9380600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:9371000-9378400	Weak transcription	Ovary	ovary
8	chr5:9371000-9381600	Weak transcription	NHDF-Ad	bronchial
9	chr5:9371200-9379200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:9372400-9376400	Enhancers	Left Ventricle	heart
11	chr5:9372600-9378000	Enhancers	Liver	Liver
12	chr5:9373000-9378800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:9373000-9388200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:9373200-9377800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:9373200-9391200	Weak transcription	Right Ventricle	heart
16	chr5:9373200-9409400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:9373600-9377200	Enhancers	Fetal Heart	heart
18	chr5:9374200-9385600	Weak transcription	NH-A	brain
19	chr5:9374400-9395200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr5:9374600-9379000	Weak transcription	Osteobl	bone
21	chr5:9374600-9381400	Weak transcription	Fetal Lung	lung
22	chr5:9374800-9376600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:9374800-9418600	Weak transcription	Aorta	Aorta
24	chr5:9375000-9378800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:9375000-9387000	Weak transcription	Fetal Intestine Small	intestine
26	chr5:9375200-9377400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:9375200-9378000	Weak transcription	Fetal Muscle Leg	muscle
28	chr5:9375200-9378400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr5:9375200-9380200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:9375200-9382200	Weak transcription	Fetal Stomach	stomach
31	chr5:9375200-9385400	Weak transcription	Fetal Kidney	kidney
32	chr5:9375400-9376800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:9375800-9380200	Weak transcription	NHLF	lung
34	chr5:9375800-9380600	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:9375800-9389200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:9376000-9376400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:9376000-9376600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr5:9376000-9379400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:9376000-9383000	Weak transcription	Pancreas	Pancrea
40	chr5:9376200-9376400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr5:9376200-9376600	Enhancers	Esophagus	oesophagus
42	chr5:9376200-9377800	Weak transcription	Placenta Amnion	Placenta Amnion

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