Variant report

Variant	rs61712455
Chromosome Location	chr8:125623627-125623628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125621598..125623778-chr8:125643368..125646296,3	K562	blood:
2	chr8:125622218..125624702-chr8:126034880..126037308,2	K562	blood:
3	chr8:125621974..125624358-chr8:125624517..125626808,3	MCF-7	breast:
4	chr8:125623069..125624735-chr8:125628903..125630679,2	K562	blood:
5	chr8:125621765..125624512-chr8:125677163..125680023,2	MCF-7	breast:
6	chr8:125623064..125627321-chr8:125629819..125632222,6	MCF-7	breast:
7	chr8:125623094..125625330-chr8:125984669..125986468,2	MCF-7	breast:
8	chr8:125606789..125608320-chr8:125623030..125625439,2	MCF-7	breast:
9	chr8:125621328..125624098-chr8:125728501..125730943,2	MCF-7	breast:
10	chr8:125623032..125625031-chr8:125629309..125631015,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000170873	Chromatin interaction
ENSG00000180938	Chromatin interaction

rs_ID	r²[population]
rs10110296	1.00[ASN][1000 genomes]
rs16899702	1.00[ASN][1000 genomes]
rs16899745	1.00[ASN][1000 genomes]
rs28515894	1.00[ASN][1000 genomes]
rs4301438	1.00[ASN][1000 genomes]
rs57360261	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59780127	1.00[ASN][1000 genomes]
rs60490907	1.00[ASN][1000 genomes]
rs60740213	1.00[ASN][1000 genomes]
rs61105996	1.00[ASN][1000 genomes]
rs61446370	1.00[ASN][1000 genomes]
rs72716935	1.00[ASN][1000 genomes]
rs73341805	1.00[ASN][1000 genomes]
rs73341837	1.00[ASN][1000 genomes]
rs73341838	1.00[ASN][1000 genomes]
rs73341884	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73341898	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73343904	1.00[ASN][1000 genomes]
rs73343908	1.00[ASN][1000 genomes]

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:125614000-125628800	Enhancers	Liver	Liver
3	chr8:125614400-125627400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:125614800-125625600	Enhancers	Fetal Muscle Leg	muscle
5	chr8:125616000-125630200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:125617400-125626000	Weak transcription	Fetal Intestine Small	intestine
7	chr8:125617400-125626200	Enhancers	Fetal Thymus	thymus
8	chr8:125617600-125625000	Enhancers	Fetal Brain Male	brain
9	chr8:125617600-125627000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:125617600-125627400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:125617600-125631400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr8:125617800-125628600	Enhancers	Primary B cells from peripheral blood	blood
13	chr8:125618000-125624400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:125618000-125626200	Enhancers	Thymus	Thymus
15	chr8:125618000-125632800	Weak transcription	HUVEC	blood vessel
16	chr8:125618000-125640400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:125618200-125624200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:125618600-125626200	Enhancers	Fetal Heart	heart
19	chr8:125618800-125626200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr8:125619200-125630800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr8:125619200-125649000	Weak transcription	Colonic Mucosa	Colon
22	chr8:125619400-125627200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:125619400-125627200	Weak transcription	HepG2	liver
24	chr8:125619400-125628400	Weak transcription	Fetal Kidney	kidney
25	chr8:125620000-125624400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr8:125620400-125624000	Enhancers	Primary B cells from cord blood	blood
27	chr8:125620800-125625200	Weak transcription	Placenta	Placenta
28	chr8:125620800-125625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:125620800-125625600	Weak transcription	HMEC	breast
30	chr8:125621000-125625200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr8:125621200-125624400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr8:125621200-125626000	Enhancers	Left Ventricle	heart
33	chr8:125621200-125627600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:125621600-125626000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr8:125621800-125625000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr8:125621800-125625800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:125621800-125626000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:125621800-125631400	Weak transcription	Esophagus	oesophagus
39	chr8:125622000-125626200	Enhancers	Brain Angular Gyrus	brain
40	chr8:125622200-125626000	Enhancers	Brain Anterior Caudate	brain
41	chr8:125622400-125626000	Enhancers	Brain Substantia Nigra	brain
42	chr8:125622600-125624000	Enhancers	Right Atrium	heart
43	chr8:125622600-125626000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr8:125622800-125626200	Enhancers	Psoas Muscle	Psoas
45	chr8:125622800-125627000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:125623000-125623800	Enhancers	Lung	lung
47	chr8:125623000-125624200	Weak transcription	Brain Hippocampus Middle	brain
48	chr8:125623000-125625200	Enhancers	Spleen	Spleen
49	chr8:125623000-125627000	Weak transcription	K562	blood
50	chr8:125623000-125627400	Weak transcription	Stomach Smooth Muscle	stomach

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