Variant report

Variant	rs61713008
Chromosome Location	chrY:15815376-15815377
allele	-/AAAAAAAAAAAAAAAAAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrY:15815133-15816694	H1-hESC	embryonic stem cell:	n/a	n/a
2	TAF7	chrY:15815350-15816451	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chrY:15815365-15815934	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chrY:15815330-15816041	HUVEC	blood vessel:	n/a	n/a
5	TCF12	chrY:15815310-15815807	A549	lung:	n/a	n/a
6	POLR2A	chrY:15815264-15816412	GM12891	blood:	n/a	n/a
7	MAX	chrY:15815326-15816124	A549	lung:	n/a	n/a
8	FOXA2	chrY:15815153-15815902	A549	lung:	n/a	n/a
9	TAF1	chrY:15815280-15815887	H1-hESC	embryonic stem cell:	n/a	n/a
10	REST	chrY:15815338-15817564	H1-neurons	neurons:	n/a	n/a
11	TAF1	chrY:15815355-15816581	H1-hESC	embryonic stem cell:	n/a	n/a
12	MAX	chrY:15815340-15816033	A549	lung:	n/a	n/a
13	TAF1	chrY:15815338-15815936	A549	lung:	n/a	n/a
14	POLR2A	chrY:15815300-15816769	H1-hESC	embryonic stem cell:	n/a	n/a
15	FOXA2	chrY:15815201-15815922	A549	lung:	n/a	n/a

Variant related genes	Relation type
TMSB4Y	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534170	chrY:15744612-16023278	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
2	esv1689693	chrY:15815360-15815393	Enhancers Active TSS Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:15813600-15815400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chrY:15814200-15817200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chrY:15814200-15817800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chrY:15814400-15817200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chrY:15814400-15817400	Active TSS	Fetal Intestine Large	intestine
6	chrY:15814400-15817800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chrY:15814400-15818000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chrY:15814400-15818000	Active TSS	Brain Germinal Matrix	brain
9	chrY:15814600-15817400	Active TSS	Fetal Intestine Small	intestine
10	chrY:15814600-15817800	Active TSS	H1 Cell Line	embryonic stem cell
11	chrY:15814800-15815400	Enhancers	Primary T cells fromperipheralblood	blood
12	chrY:15814800-15815400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chrY:15814800-15815400	Enhancers	Dnd41	blood
14	chrY:15814800-15816600	Active TSS	Gastric	stomach
15	chrY:15814800-15816600	Active TSS	HUVEC	blood vessel
16	chrY:15814800-15816800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chrY:15814800-15816800	Active TSS	Duodenum Mucosa	Duodenum
18	chrY:15814800-15817000	Active TSS	Liver	Liver
19	chrY:15814800-15817000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chrY:15814800-15817200	Active TSS	Right Ventricle	heart
21	chrY:15814800-15817400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chrY:15814800-15818200	Active TSS	Brain Hippocampus Middle	brain
23	chrY:15815000-15815400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chrY:15815000-15817400	Active TSS	Aorta	Aorta
25	chrY:15815000-15817800	Active TSS	A549	lung
26	chrY:15815200-15815400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chrY:15815200-15815400	Weak transcription	Right Atrium	heart

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