Variant report

Variant	rs61729145
Chromosome Location	chr19:38673353-38673354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38673271..38675565-chr19:38714868..38716918,2	K562	blood:

Variant related genes	Relation type
ENSG00000011332	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62121436	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833821	chr19:38629937-38756792	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911657	chr19:38655449-38753786	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38653600-38696400	Weak transcription	Small Intestine	intestine
2	chr19:38656200-38675200	Weak transcription	Stomach Mucosa	stomach
3	chr19:38656400-38674000	Weak transcription	Colon Smooth Muscle	Colon
4	chr19:38657600-38673400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:38657600-38673800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:38657600-38696200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr19:38658400-38674000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr19:38658400-38684800	Weak transcription	HepG2	liver
9	chr19:38658400-38694000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr19:38659600-38673600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr19:38659600-38673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr19:38661200-38673600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr19:38661400-38682600	Weak transcription	Aorta	Aorta
14	chr19:38661600-38673600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr19:38661600-38674000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr19:38661800-38682400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr19:38664600-38674000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr19:38664600-38688600	Weak transcription	NH-A	brain
19	chr19:38664600-38699800	Weak transcription	Brain Substantia Nigra	brain
20	chr19:38664800-38673600	Weak transcription	Brain Anterior Caudate	brain
21	chr19:38664800-38674200	Weak transcription	Brain Hippocampus Middle	brain
22	chr19:38665000-38684400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr19:38665200-38674200	Weak transcription	Psoas Muscle	Psoas
24	chr19:38665200-38684200	Weak transcription	HMEC	breast
25	chr19:38666200-38682800	Weak transcription	Right Ventricle	heart
26	chr19:38666400-38673400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr19:38666400-38673400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr19:38666400-38673600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr19:38667200-38673400	Weak transcription	NHEK	skin
30	chr19:38670800-38677400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr19:38671000-38676600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr19:38671000-38676800	Strong transcription	Primary T cells from cord blood	blood
33	chr19:38671200-38673400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr19:38671200-38673600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr19:38671200-38673800	Strong transcription	GM12878-XiMat	blood
36	chr19:38671200-38674000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr19:38671200-38676800	Strong transcription	Liver	Liver
38	chr19:38671200-38684400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr19:38671200-38691800	Weak transcription	Brain Angular Gyrus	brain
40	chr19:38671400-38673600	Weak transcription	Ovary	ovary
41	chr19:38671600-38673600	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr19:38671600-38673600	Weak transcription	Placenta	Placenta
43	chr19:38671600-38673800	Strong transcription	Fetal Intestine Large	intestine
44	chr19:38671600-38674000	Weak transcription	Fetal Kidney	kidney
45	chr19:38671600-38674600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr19:38671800-38673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr19:38671800-38673600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr19:38671800-38673600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr19:38671800-38673600	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr19:38671800-38673800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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