Variant report

Variant	rs61730563
Chromosome Location	chr19:40541232-40541233
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:40527957..40529948-chr19:40541026..40542619,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4621102	1.00[AMR][1000 genomes]
rs73930652	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40528600-40543800	ZNF genes & repeats	Liver	Liver
2	chr19:40529000-40543800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:40529200-40543800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:40529200-40543800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:40530600-40543800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:40535000-40543800	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr19:40535600-40542400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr19:40535800-40542400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr19:40536000-40543800	ZNF genes & repeats	Fetal Brain Female	brain
10	chr19:40536400-40543600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr19:40536600-40543800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:40537000-40542400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr19:40537400-40542600	ZNF genes & repeats	Dnd41	blood
14	chr19:40537400-40543000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr19:40537400-40543000	ZNF genes & repeats	Brain Anterior Caudate	brain
16	chr19:40537400-40543800	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr19:40537600-40543400	ZNF genes & repeats	A549	lung
18	chr19:40537600-40543600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr19:40537800-40543200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr19:40538800-40542800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr19:40538800-40543800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr19:40539000-40541800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr19:40539000-40542200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
24	chr19:40539000-40542200	ZNF genes & repeats	HSMMtube	muscle
25	chr19:40539000-40542400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr19:40539000-40542400	ZNF genes & repeats	Fetal Heart	heart
27	chr19:40539000-40543600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
28	chr19:40539200-40541400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr19:40539200-40542200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr19:40539200-40542400	ZNF genes & repeats	HSMM	muscle
31	chr19:40539200-40543800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr19:40539400-40543600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr19:40539400-40543600	ZNF genes & repeats	Fetal Lung	lung
34	chr19:40539600-40541800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:40539600-40543400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
36	chr19:40539600-40543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr19:40539600-40543600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr19:40539600-40543800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
39	chr19:40539600-40543800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
40	chr19:40539800-40543800	ZNF genes & repeats	Psoas Muscle	Psoas
41	chr19:40540000-40542400	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr19:40540000-40542400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
43	chr19:40540000-40542400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
44	chr19:40540000-40542800	ZNF genes & repeats	Brain Substantia Nigra	brain
45	chr19:40540200-40541400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
46	chr19:40540200-40541400	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr19:40540200-40542400	ZNF genes & repeats	HepG2	liver
48	chr19:40540400-40542000	ZNF genes & repeats	Left Ventricle	heart
49	chr19:40540400-40543400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
50	chr19:40540400-40543800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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