Variant report
| Variant | rs61730744 |
|---|---|
| Chromosome Location | chr7:124116848-124116849 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | USF1 | chr7:124116723-124116924 | HepG2 | liver: | n/a | chr7:124116824-124116835 |
| 2 | GABPA | chr7:124116741-124116897 | Hela-S3 | cervix: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:124116352..124119655-chr7:124119768..124122495,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000213296 | TF binding region |
| ENSG00000213296 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1795113 | chr7:123885477-124188665 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv429809 | chr7:123937674-124835925 | Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
| 3 | esv1808414 | chr7:123957376-124188665 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv12576 | chr7:124113222-124117647 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv10271 | chr7:124115496-124117956 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv970934 | chr7:124116030-124117980 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv471452 | chr7:124116425-124117009 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
