Variant report

Variant	rs61732522
Chromosome Location	chr10:96012108-96012109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12778016	0.81[AFR][1000 genomes]
rs17516758	0.87[AFR][1000 genomes]
rs35247409	0.82[AFR][1000 genomes]
rs56832087	0.83[EUR][1000 genomes]
rs60342760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080659	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:95984800-96023800	Weak transcription	Pancreas	Pancrea
4	chr10:95985800-96033800	Weak transcription	Left Ventricle	heart
5	chr10:95994600-96045400	Weak transcription	Lung	lung
6	chr10:95995800-96051800	Weak transcription	Fetal Kidney	kidney
7	chr10:96004200-96015200	Weak transcription	Brain Substantia Nigra	brain
8	chr10:96004200-96022600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr10:96004400-96034000	Weak transcription	Fetal Brain Male	brain
10	chr10:96005000-96016400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:96005000-96031200	Weak transcription	Brain Germinal Matrix	brain
12	chr10:96005200-96014200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:96005600-96019000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:96006000-96013600	Weak transcription	Right Ventricle	heart
15	chr10:96006400-96012200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:96006400-96012200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:96006600-96012200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:96006600-96012200	Weak transcription	Adipose Nuclei	Adipose
19	chr10:96006600-96012400	Weak transcription	Aorta	Aorta
20	chr10:96006600-96012400	Weak transcription	Fetal Brain Female	brain
21	chr10:96006600-96012400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:96006600-96013000	Weak transcription	Colonic Mucosa	Colon
23	chr10:96006600-96030200	Weak transcription	Gastric	stomach
24	chr10:96006600-96030200	Weak transcription	Ovary	ovary
25	chr10:96006600-96033600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:96008600-96022600	Strong transcription	Fetal Muscle Leg	muscle
27	chr10:96009400-96024000	Weak transcription	Small Intestine	intestine
28	chr10:96009600-96018800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:96010400-96012600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:96010600-96012600	Enhancers	Fetal Heart	heart
31	chr10:96010600-96014800	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:96010600-96014800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr10:96010800-96017200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:96011200-96014400	Strong transcription	Placenta	Placenta
35	chr10:96011200-96016800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:96011400-96012600	Strong transcription	Stomach Mucosa	stomach
37	chr10:96011400-96013200	Strong transcription	A549	lung
38	chr10:96011400-96015000	Strong transcription	Fetal Stomach	stomach
39	chr10:96011800-96012800	Genic enhancers	HSMMtube	muscle
40	chr10:96011800-96015200	Strong transcription	Stomach Smooth Muscle	stomach
41	chr10:96012000-96012600	Strong transcription	Fetal Lung	lung
42	chr10:96012000-96012800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:96012000-96012800	Strong transcription	Spleen	Spleen
44	chr10:96012000-96016000	Strong transcription	Fetal Intestine Small	intestine
45	chr10:96012000-96016800	Strong transcription	Fetal Intestine Large	intestine
46	chr10:96012000-96016800	Strong transcription	Rectal Mucosa Donor 31	rectum

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