Variant report

Variant	rs61733043
Chromosome Location	chr5:178413722-178413723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:178413721-178413771	ProgFib	skin:	n/a
2	chr5:178413721-178413771	SK-N-MC	brain:	n/a
3	chr5:178413721-178413771	RPTEC	kidney:	n/a
4	chr5:178413721-178413771	K562	blood:	n/a
5	chr5:178413721-178413771	GM12892	blood:	n/a
6	chr5:178413721-178413771	HPAEpiC	pulmonary alveolar:	n/a
7	chr5:178413721-178413771	PrEC	prostate:	n/a
8	chr5:178413721-178413771	CMK	blood:	n/a
9	chr5:178413721-178413771	HepG2	liver:	n/a
10	chr5:178413721-178413771	HCM	heart:	n/a
11	chr5:178413721-178413771	SK-N-SH	brain:	n/a
12	chr5:178413721-178413771	IMR90	lung:	fetal
13	chr5:178413721-178413771	HRE	kidney:	n/a
14	chr5:178413721-178413771	ECC-1	luminal epithelium:	n/a
15	chr5:178413721-178413771	AG04450	lung:	fetal
16	chr5:178413721-178413771	Jurkat	blood:	n/a
17	chr5:178413721-178413771	AG10803	skin:	n/a
18	chr5:178413721-178413771	AG09309	skin:	n/a
19	chr5:178413721-178413771	HIPEpiC	eye:	n/a
20	chr5:178413721-178413771	MCF-7	breast:	n/a
21	chr5:178413721-178413771	BJ	skin:	n/a
22	chr5:178413721-178413771	Caco-2	colon:	n/a
23	chr5:178413721-178413771	GM12878	blood:	n/a
24	chr5:178413721-178413771	ovcar-3	ovarian:	n/a
25	chr5:178413721-178413771	HAEpiC	amniotic membrane:	n/a
26	chr5:178413721-178413771	AG09319	gingival:	n/a
27	chr5:178413721-178413771	NT2-D1	testis:	n/a
28	chr5:178413721-178413771	SAEC	small airway:	n/a
29	chr5:178413721-178413771	HEK293	kidney:	embryo
30	chr5:178413721-178413771	HNPCEpiC	eye:	n/a
31	chr5:178413721-178413771	AG04449	skin:	fetal
32	chr5:178413721-178413771	Hepatocyte	liver:	n/a
33	chr5:178413721-178413771	HRPEpiC	eye:	n/a
34	chr5:178413721-178413771	MCF10A-Er-Src	breast:	n/a
35	chr5:178413721-178413771	H1-hESC	embryonic stem cell:	embryo
36	chr5:178413721-178413771	GM19239	blood:	n/a
37	chr5:178413721-178413771	HL-60	blood:	n/a
38	chr5:178413721-178413771	AoSMC	blood vessel:	n/a
39	chr5:178413721-178413771	Hela-S3	cervix:	n/a
40	chr5:178413721-178413771	PFSK-1	brain:	n/a
41	chr5:178413721-178413771	SKMC	muscle:	n/a
42	chr5:178413721-178413771	GM12891	blood:	n/a
43	chr5:178413721-178413771	NH-A	brain:	n/a
44	chr5:178413721-178413771	HRCEpiC	kidney:	n/a
45	chr5:178413721-178413771	LNCaP	prostate:	n/a
46	chr5:178413721-178413771	SK-N-SH_RA	brain:	n/a
47	chr5:178413721-178413771	HUVEC	blood vessel:	n/a
48	chr5:178413721-178413771	T-47D	breast:	n/a
49	chr5:178413721-178413771	PANC-1	pancreas:	n/a
50	chr5:178413721-178413771	HCT-116	colon:	n/a

No data

Variant related genes	Relation type
GRM6	CpG island

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2411986	1.00[AMR][1000 genomes]
rs2411987	1.00[AMR][1000 genomes]
rs59982771	1.00[AMR][1000 genomes]
rs62638621	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017941	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537974	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv883219	chr5:178390237-178454118	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv883220	chr5:178394717-178454118	ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv600490	chr5:178405251-178430375	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv527183	chr5:178409285-178415937	ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv516324	chr5:178410538-178415937	ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv883221	chr5:178410538-178454118	Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
2	chr5:178401000-178414600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr5:178402000-178414400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178405400-178418200	ZNF genes & repeats	Brain Germinal Matrix	brain
5	chr5:178408000-178413800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:178410000-178414600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:178413000-178413800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr5:178413000-178413800	ZNF genes & repeats	Gastric	stomach
9	chr5:178413000-178417400	ZNF genes & repeats	Fetal Stomach	stomach
10	chr5:178413200-178417200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr5:178413600-178413800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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