Variant report

Variant	rs61733263
Chromosome Location	chr16:31159754-31159755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:31149322..31163059-chr16:31188531..31198512,46	MCF-7	breast:
2	chr16:31157660..31164019-chr16:31188659..31195219,17	MCF-7	breast:
3	chr16:31158383..31160788-chr16:31186021..31187746,2	K562	blood:
4	chr16:31159450..31160154-chr16:31191009..31191965,2	MCF-7	breast:
5	chr16:31158034..31160388-chr16:31169650..31172147,2	MCF-7	breast:
6	chr16:31149707..31163529-chr16:31187237..31198825,44	K562	blood:
7	chr16:31151687..31162079-chr16:31189046..31201898,43	K562	blood:
8	chr16:30994877..30997297-chr16:31156140..31160263,3	MCF-7	breast:
9	chr16:31008122..31010429-chr16:31157760..31160273,2	MCF-7	breast:
10	chr16:31151491..31155912-chr16:31157765..31163894,11	MCF-7	breast:
11	chr16:31152927..31156733-chr16:31157447..31161176,6	MCF-7	breast:
12	chr16:31157423..31159789-chr16:31170400..31172208,2	MCF-7	breast:
13	chr16:31157885..31160193-chr16:31199237..31201496,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000099377	Chromatin interaction
ENSG00000178226	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000099365	Chromatin interaction
ENSG00000260304	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35319087	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7198152	1.00[AMR][1000 genomes]
rs72547529	1.00[AMR][1000 genomes]
rs7499974	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
4	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
5	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
6	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
7	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
8	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
9	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
10	nsv905740	chr16:31066249-31232437	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
11	nsv905741	chr16:31066249-31247924	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
12	nsv905742	chr16:31102321-31247924	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	188 gene(s)	inside rSNPs	diseases
13	nsv542900	chr16:31137352-31197027	Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31154400-31160600	Weak transcription	Hela-S3	cervix
2	chr16:31154400-31190400	Weak transcription	Right Atrium	heart
3	chr16:31154600-31161800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr16:31155400-31159800	Weak transcription	Esophagus	oesophagus
5	chr16:31155400-31160400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr16:31157400-31161200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr16:31159000-31160000	Bivalent Enhancer	Placenta	Placenta
8	chr16:31159000-31160200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr16:31159200-31160200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr16:31159200-31160200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr16:31159200-31160200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr16:31159400-31159800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
13	chr16:31159400-31159800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr16:31159400-31159800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr16:31159400-31159800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr16:31159400-31159800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr16:31159400-31159800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
18	chr16:31159400-31159800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
19	chr16:31159400-31159800	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr16:31159400-31159800	Flanking Bivalent TSS/Enh	NHEK	skin
21	chr16:31159400-31160000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr16:31159400-31160000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr16:31159400-31160000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr16:31159400-31160000	Enhancers	Liver	Liver
25	chr16:31159400-31160000	Flanking Active TSS	Pancreas	Pancrea
26	chr16:31159400-31160000	Flanking Active TSS	Placenta Amnion	Placenta Amnion
27	chr16:31159400-31160000	ZNF genes & repeats	Spleen	Spleen
28	chr16:31159400-31160200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
29	chr16:31159400-31160200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr16:31159400-31160200	Active TSS	H9 Cell Line	embryonic stem cell
31	chr16:31159400-31160200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
32	chr16:31159400-31160200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:31159400-31160400	Enhancers	Gastric	stomach
34	chr16:31159400-31160600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
35	chr16:31159400-31160600	Enhancers	Colonic Mucosa	Colon
36	chr16:31159600-31159800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr16:31159600-31159800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr16:31159600-31159800	Flanking Bivalent TSS/Enh	Left Ventricle	heart
39	chr16:31159600-31160000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr16:31159600-31160000	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr16:31159600-31160000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr16:31159600-31160000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
43	chr16:31159600-31160000	Active TSS	Rectal Mucosa Donor 31	rectum
44	chr16:31159600-31160000	Flanking Active TSS	Right Ventricle	heart
45	chr16:31159600-31160000	Flanking Bivalent TSS/Enh	HMEC	breast
46	chr16:31159600-31160000	Active TSS	K562	blood
47	chr16:31159600-31160200	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr16:31159600-31160200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr16:31159600-31160200	Enhancers	Fetal Intestine Small	intestine
50	chr16:31159600-31160200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon

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