Variant report

Variant	rs61733842
Chromosome Location	chr15:74836563-74836564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74835813-74836933	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:74834818-74836744	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74749825..74755412-chr15:74831975..74836764,7	K562	blood:
2	chr15:74831828..74838842-chr15:74904667..74909546,11	MCF-7	breast:
3	chr15:74780460..74785045-chr15:74835980..74840156,5	MCF-7	breast:
4	chr15:74830417..74841177-chr15:74901572..74909407,24	K562	blood:
5	chr15:74836156..74839758-chr15:74905845..74909473,6	MCF-7	breast:

No data

Variant related genes	Relation type
ARID3B	TF binding region
ENSG00000260919	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260103	Chromatin interaction
ENSG00000212279	Chromatin interaction
ENSG00000138629	Chromatin interaction
ENSG00000261775	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17861163	1.00[EUR][1000 genomes]
rs4987133	1.00[EUR][1000 genomes]
rs61747605	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74834000-74838200	Weak transcription	Ovary	ovary
2	chr15:74834200-74838000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:74834400-74836800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:74834400-74837600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:74834400-74838000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:74834400-74838000	Weak transcription	Right Atrium	heart
7	chr15:74834400-74838200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:74834400-74838200	Weak transcription	Colonic Mucosa	Colon
9	chr15:74834400-74838200	Weak transcription	Left Ventricle	heart
10	chr15:74834400-74838200	Weak transcription	Lung	lung
11	chr15:74834400-74838200	Weak transcription	Spleen	Spleen
12	chr15:74834400-74838400	Weak transcription	Aorta	Aorta
13	chr15:74834400-74838400	Weak transcription	Psoas Muscle	Psoas
14	chr15:74834600-74836800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:74834600-74837600	Weak transcription	Brain Angular Gyrus	brain
16	chr15:74834600-74837600	Weak transcription	Brain Anterior Caudate	brain
17	chr15:74834600-74837600	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:74834600-74837800	Weak transcription	Brain Substantia Nigra	brain
19	chr15:74834600-74837800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:74834600-74838000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:74834600-74838600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:74834600-74842800	Weak transcription	Esophagus	oesophagus
23	chr15:74834800-74836800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr15:74834800-74837000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr15:74834800-74837600	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:74834800-74837800	Weak transcription	Stomach Mucosa	stomach
27	chr15:74834800-74838000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:74834800-74838000	Weak transcription	Adipose Nuclei	Adipose
29	chr15:74834800-74838000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:74834800-74838000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:74834800-74838000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:74834800-74838200	Weak transcription	NHLF	lung
33	chr15:74834800-74838600	Enhancers	Placenta	Placenta
34	chr15:74834800-74838800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr15:74835000-74837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr15:74835000-74837400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:74835000-74837600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr15:74835000-74837800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:74835000-74837800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:74835200-74836600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:74835200-74836600	Weak transcription	Fetal Intestine Small	intestine
42	chr15:74835200-74836800	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:74835200-74836800	Weak transcription	Osteobl	bone
44	chr15:74835200-74837800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:74835200-74838000	Weak transcription	Right Ventricle	heart
46	chr15:74835200-74838000	Weak transcription	HUVEC	blood vessel
47	chr15:74835200-74838200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:74835200-74838200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:74835200-74838200	Weak transcription	Gastric	stomach
50	chr15:74835200-74838200	Weak transcription	Pancreas	Pancrea

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