Variant report

Variant	rs61734152
Chromosome Location	chr3:150874033-150874034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150872853..150875776-chr3:150880011..150881883,2	K562	blood:
2	chr3:150871697..150875423-chr3:150878155..150880928,3	K562	blood:
3	chr3:150873170..150876037-chr3:150877057..150879600,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16863189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57803356	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012985	1.00[AMR][1000 genomes]
rs73012994	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150863200-150889000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:150864200-150874400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:150865000-150886400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:150868800-150887400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:150871000-150874200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:150871200-150888400	Weak transcription	Fetal Intestine Small	intestine
7	chr3:150872200-150874800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:150872200-150881800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:150872600-150874400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:150872600-150874600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:150872800-150874200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:150872800-150910800	Weak transcription	Brain Germinal Matrix	brain
13	chr3:150873000-150874200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:150873000-150874200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:150873000-150874200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:150873000-150874200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:150873000-150874200	Enhancers	Ovary	ovary
18	chr3:150873000-150874400	Enhancers	Placenta	Placenta
19	chr3:150873000-150874600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:150873000-150874600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:150873000-150874600	Enhancers	Fetal Lung	lung
22	chr3:150873000-150874800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:150873000-150878000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:150873200-150874600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:150873200-150874600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:150873200-150881600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:150873200-150884000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:150873200-150887000	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:150873200-150888800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:150873200-150910200	Weak transcription	Brain Angular Gyrus	brain
31	chr3:150873400-150877000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:150873400-150877200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:150873400-150878200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr3:150873400-150879800	Weak transcription	Fetal Brain Male	brain
35	chr3:150873600-150874600	Strong transcription	Primary hematopoietic stem cells	blood
36	chr3:150873600-150878200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:150873600-150889600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:150873800-150890000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr3:150873800-150890000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:150873800-150913800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr3:150874000-150874200	Enhancers	Brain Anterior Caudate	brain
42	chr3:150874000-150874800	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr3:150874000-150876400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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