Variant report

Variant	rs61734735
Chromosome Location	chr6:33333563-33333564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000236104	Chromatin interaction
ENSG00000225644	Chromatin interaction
ENSG00000204209	Chromatin interaction
ENSG00000231925	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11961893	1.00[AMR][1000 genomes]
rs11964724	1.00[AMR][1000 genomes]
rs12111285	1.00[AMR][1000 genomes]
rs55897728	1.00[AMR][1000 genomes]
rs56085633	1.00[AMR][1000 genomes]
rs56122765	1.00[AMR][1000 genomes]
rs56148814	1.00[AMR][1000 genomes]
rs56226140	1.00[AMR][1000 genomes]
rs56875788	1.00[AMR][1000 genomes]
rs57104544	1.00[AMR][1000 genomes]
rs57290518	1.00[AMR][1000 genomes]
rs58043092	1.00[AMR][1000 genomes]
rs58058146	1.00[AMR][1000 genomes]
rs58312523	1.00[AMR][1000 genomes]
rs58566767	1.00[AMR][1000 genomes]
rs61138871	1.00[AMR][1000 genomes]
rs61589902	1.00[AMR][1000 genomes]
rs61733862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469473	1.00[AMR][1000 genomes]
rs9469476	1.00[AMR][1000 genomes]
rs9469478	1.00[AMR][1000 genomes]
rs9469479	1.00[AMR][1000 genomes]
rs9969005	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv970110	chr6:33331311-33342922	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33324600-33340200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33331800-33333600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:33332000-33333600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:33332600-33333600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:33332800-33340200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:33333000-33340200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:33333400-33335000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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