Variant report

Variant	rs61734941
Chromosome Location	chr12:8988209-8988210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7134750	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521922	chr12:8986379-8991970	Enhancers Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8979000-8995400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:8982200-9022000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:8983400-9017600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:8983800-8999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:8985400-8992400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:8987400-8989000	Strong transcription	Esophagus	oesophagus
7	chr12:8987400-8991800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr12:8987600-9004200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:8987600-9040000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:8987800-9002800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:8987800-9004800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:8987800-9012800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:8988000-8988400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:8988000-8989000	Enhancers	K562	blood
15	chr12:8988200-8990200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:8988200-8990600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr12:8988200-8990600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:8988200-8991800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:8988200-9012800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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