Variant report

Variant	rs61736003
Chromosome Location	chr3:151045976-151045977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:151029737..151031573-chr3:151044175..151046393,2	MCF-7	breast:
2	chr3:151008127..151009123-chr3:151045003..151046087,3	MCF-7	breast:
3	chr3:150945207..150946162-chr3:151045062..151046047,6	K562	blood:
4	chr3:151045500..151046403-chr3:151556475..151557090,2	K562	blood:
5	chr3:151008218..151009783-chr3:151044914..151046119,9	MCF-7	breast:
6	chr3:151033641..151035853-chr3:151044142..151046293,2	MCF-7	breast:
7	chr3:151021027..151023183-chr3:151044316..151046639,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144893	Chromatin interaction
ENSG00000138271	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1016629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10935846	1.00[ASN][1000 genomes]
rs1873620	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1873623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28683077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35291743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35723440	1.00[ASN][1000 genomes]
rs58321514	1.00[ASN][1000 genomes]
rs60356898	1.00[ASN][1000 genomes]
rs6796950	1.00[ASN][1000 genomes]
rs73021144	1.00[ASN][1000 genomes]
rs937121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151038800-151046400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:151042600-151046200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:151044400-151047000	Active TSS	Brain Hippocampus Middle	brain
4	chr3:151044600-151046200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
5	chr3:151045000-151046000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:151045000-151046800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr3:151045000-151046800	Active TSS	Brain Cingulate Gyrus	brain
8	chr3:151045000-151046800	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr3:151045000-151047200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:151045000-151047200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr3:151045200-151046000	Enhancers	NHLF	lung
12	chr3:151045200-151046200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:151045200-151046200	Enhancers	Brain Anterior Caudate	brain
14	chr3:151045200-151046200	Enhancers	HMEC	breast
15	chr3:151045200-151046200	Enhancers	NHEK	skin
16	chr3:151045200-151046600	Active TSS	Brain Substantia Nigra	brain
17	chr3:151045200-151046800	Active TSS	Duodenum Mucosa	Duodenum
18	chr3:151045200-151046800	Active TSS	Right Atrium	heart
19	chr3:151045200-151047000	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr3:151045200-151047600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:151045400-151046000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:151045400-151046200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:151045400-151046200	Enhancers	A549	lung
24	chr3:151045400-151046400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:151045400-151046400	Weak transcription	Liver	Liver
26	chr3:151045400-151047400	Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr3:151045400-151047800	Active TSS	Primary monocytes fromperipheralblood	blood
28	chr3:151045600-151046200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:151045600-151046200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:151045600-151046600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:151045600-151046600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:151045600-151047200	Active TSS	Primary T cells from cord blood	blood
33	chr3:151045600-151047800	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr3:151045600-151056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:151045600-151063600	Weak transcription	Brain Angular Gyrus	brain
36	chr3:151045800-151046200	Enhancers	Fetal Thymus	thymus
37	chr3:151045800-151046400	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr3:151045800-151046800	Enhancers	Hela-S3	cervix
39	chr3:151045800-151046800	Enhancers	NHDF-Ad	bronchial

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