Variant report

Variant	rs61736100
Chromosome Location	chr3:98251352-98251353
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11915528	1.00[EUR][1000 genomes]
rs11923249	1.00[EUR][1000 genomes]
rs58112158	1.00[EUR][1000 genomes]
rs58222292	1.00[EUR][1000 genomes]
rs61691130	1.00[EUR][1000 genomes]
rs72922799	1.00[EUR][1000 genomes]
rs72924716	1.00[EUR][1000 genomes]
rs72939169	1.00[EUR][1000 genomes]
rs72939173	1.00[EUR][1000 genomes]
rs73854822	1.00[EUR][1000 genomes]
rs73854826	1.00[EUR][1000 genomes]
rs73858713	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528056	chr3:98101101-98317836	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv520503	chr3:98102801-98317836	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv834774	chr3:98108423-98274064	Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv834775	chr3:98170059-98367552	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv236502	chr3:98250046-98254624	Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98250200-98256200	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr3:98250400-98251400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:98250600-98252400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:98250800-98251400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr3:98250800-98251600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
6	chr3:98250800-98251600	Enhancers	K562	blood
7	chr3:98250800-98252200	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr3:98250800-98252600	Active TSS	Colonic Mucosa	Colon
9	chr3:98250800-98253200	Active TSS	Primary T cells fromperipheralblood	blood
10	chr3:98250800-98253600	Active TSS	Duodenum Mucosa	Duodenum
11	chr3:98251000-98252200	Active TSS	Esophagus	oesophagus
12	chr3:98251000-98252400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:98251000-98252400	Active TSS	Sigmoid Colon	Sigmoid Colon
14	chr3:98251200-98251400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:98251200-98251800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:98251200-98252400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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