Variant report

Variant	rs61736289
Chromosome Location	chr12:31815167-31815168
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12828347	1.00[ASN][1000 genomes]
rs17566133	1.00[ASN][1000 genomes]
rs35774037	1.00[ASN][1000 genomes]
rs4931527	1.00[ASN][1000 genomes]
rs4931556	1.00[ASN][1000 genomes]
rs55924094	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1043010	chr12:31798446-32143151	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv541446	chr12:31798446-32143151	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3432694	chr12:31801467-32109828	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv898966	chr12:31810126-31944985	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31812800-31818000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:31812800-31818000	Weak transcription	Spleen	Spleen
3	chr12:31812800-31818200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:31812800-31819600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:31812800-31823800	Weak transcription	Small Intestine	intestine
6	chr12:31813000-31815800	Enhancers	Primary B cells from peripheral blood	blood
7	chr12:31813000-31815800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr12:31813000-31816800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:31813000-31817200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:31813000-31822000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:31813000-31822000	Weak transcription	NH-A	brain
12	chr12:31813000-31826000	Weak transcription	Gastric	stomach
13	chr12:31813200-31816800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr12:31813200-31817000	Weak transcription	Fetal Kidney	kidney
15	chr12:31813200-31818000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:31813200-31818000	Weak transcription	Placenta	Placenta
17	chr12:31813200-31818400	Weak transcription	Esophagus	oesophagus
18	chr12:31813200-31822000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:31813200-31837000	Weak transcription	Fetal Brain Male	brain
20	chr12:31813400-31815200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:31813400-31815200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr12:31813400-31815200	Weak transcription	Brain Substantia Nigra	brain
23	chr12:31813400-31816400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr12:31813400-31816400	Weak transcription	HepG2	liver
25	chr12:31813400-31816600	Weak transcription	NHLF	lung
26	chr12:31813400-31816800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr12:31813400-31818800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr12:31813400-31820600	Weak transcription	HSMMtube	muscle
29	chr12:31813400-31820800	Weak transcription	Ovary	ovary
30	chr12:31813400-31821600	Weak transcription	Thymus	Thymus
31	chr12:31813400-31821800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr12:31813400-31821800	Weak transcription	Colon Smooth Muscle	Colon
33	chr12:31813400-31821800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr12:31813400-31821800	Weak transcription	Fetal Lung	lung
35	chr12:31813400-31822000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr12:31813400-31822000	Weak transcription	Brain Anterior Caudate	brain
37	chr12:31813400-31822000	Weak transcription	Fetal Intestine Large	intestine
38	chr12:31813400-31822000	Weak transcription	Psoas Muscle	Psoas
39	chr12:31813400-31822000	Weak transcription	Right Ventricle	heart
40	chr12:31813400-31822200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr12:31813400-31822200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr12:31813400-31825200	Weak transcription	Aorta	Aorta
43	chr12:31813400-31825400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr12:31813400-31825600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr12:31813400-31826600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr12:31813400-31835200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr12:31813400-31835600	Weak transcription	Brain Angular Gyrus	brain
48	chr12:31813400-31836200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr12:31813600-31817000	Weak transcription	K562	blood
50	chr12:31813600-31818200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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