Variant report

Variant	rs61736470
Chromosome Location	chr4:22414862-22414863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv878752	chr4:22414023-22501043	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22368800-22418600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:22371600-22449800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:22383200-22438000	Weak transcription	Lung	lung
4	chr4:22383600-22442800	Weak transcription	A549	lung
5	chr4:22385400-22430400	Weak transcription	Psoas Muscle	Psoas
6	chr4:22386000-22446600	Weak transcription	Fetal Thymus	thymus
7	chr4:22388000-22416600	Weak transcription	NHLF	lung
8	chr4:22388200-22432400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:22388200-22442800	Weak transcription	Brain Germinal Matrix	brain
10	chr4:22388400-22417800	Weak transcription	HUVEC	blood vessel
11	chr4:22388400-22473600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:22388800-22469600	Weak transcription	Colonic Mucosa	Colon
13	chr4:22389200-22473600	Weak transcription	Fetal Brain Male	brain
14	chr4:22390600-22423600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:22390600-22439600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:22390600-22456200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:22390600-22459800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:22390800-22418000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:22390800-22420400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:22390800-22421400	Weak transcription	HepG2	liver
21	chr4:22390800-22429400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:22391400-22415400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr4:22393000-22435200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:22393400-22444800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:22393600-22459800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:22393800-22418000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:22393800-22446400	Weak transcription	NH-A	brain
28	chr4:22393800-22453000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:22397000-22428400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:22398400-22423200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:22399000-22416800	Strong transcription	Liver	Liver
32	chr4:22399800-22442800	Weak transcription	Fetal Brain Female	brain
33	chr4:22400000-22448000	Weak transcription	Left Ventricle	heart
34	chr4:22400600-22419800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:22400800-22422000	Weak transcription	HSMMtube	muscle
36	chr4:22400800-22429200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr4:22400800-22430000	Weak transcription	Adipose Nuclei	Adipose
38	chr4:22400800-22449600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:22400800-22461800	Weak transcription	Gastric	stomach
40	chr4:22401000-22419600	Weak transcription	Aorta	Aorta
41	chr4:22401000-22425000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:22401200-22431000	Weak transcription	Ovary	ovary
43	chr4:22401400-22423600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:22401600-22418000	Weak transcription	Colon Smooth Muscle	Colon
45	chr4:22402400-22419800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr4:22405000-22424200	Weak transcription	Fetal Kidney	kidney
47	chr4:22405400-22422600	Weak transcription	NHEK	skin
48	chr4:22405400-22446000	Weak transcription	Pancreas	Pancrea
49	chr4:22406800-22420000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:22406800-22425800	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links