Variant report

Variant	rs61736697
Chromosome Location	chr18:43795986-43795987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:43793217..43797206-chr18:43801637..43804775,4	K562	blood:
2	chr18:43793521..43796168-chr18:43800123..43802116,2	MCF-7	breast:
3	chr18:43792929..43795113-chr18:43795135..43797949,3	K562	blood:
4	chr18:43795518..43797206-chr18:43801637..43804077,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73425144	0.87[AFR][1000 genomes]
rs73425147	0.87[AFR][1000 genomes]
rs73425148	0.87[AFR][1000 genomes]
rs73425157	0.87[AFR][1000 genomes]
rs73425160	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv960275	chr18:43795927-43796427	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43756800-43796000	Weak transcription	Esophagus	oesophagus
2	chr18:43761200-43796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr18:43763600-43796000	Weak transcription	Fetal Lung	lung
5	chr18:43769200-43802800	Weak transcription	Brain Hippocampus Middle	brain
6	chr18:43770800-43796000	Weak transcription	Brain Substantia Nigra	brain
7	chr18:43772200-43796000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr18:43776400-43802000	Weak transcription	Brain Germinal Matrix	brain
9	chr18:43777000-43812000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr18:43777800-43805000	Weak transcription	Fetal Intestine Small	intestine
11	chr18:43783600-43796000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr18:43784600-43802200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr18:43784800-43796000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr18:43784800-43796000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr18:43784800-43796000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr18:43785200-43796000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr18:43785400-43796000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr18:43786800-43796000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr18:43789400-43796200	Weak transcription	A549	lung
20	chr18:43791400-43796000	Weak transcription	Left Ventricle	heart
21	chr18:43791600-43799600	Weak transcription	Psoas Muscle	Psoas
22	chr18:43791600-43804200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr18:43791800-43796000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr18:43791800-43796000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr18:43791800-43796000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr18:43791800-43796000	Weak transcription	Pancreas	Pancrea
27	chr18:43791800-43798600	Weak transcription	K562	blood
28	chr18:43791800-43800000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr18:43792000-43796000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr18:43792200-43796000	Weak transcription	NHEK	skin
31	chr18:43792200-43814600	Weak transcription	Colon Smooth Muscle	Colon
32	chr18:43792400-43796000	Weak transcription	NH-A	brain
33	chr18:43792400-43796000	Weak transcription	Osteobl	bone
34	chr18:43792600-43796000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr18:43792600-43799800	Weak transcription	NHLF	lung
36	chr18:43792800-43799600	Weak transcription	NHDF-Ad	bronchial
37	chr18:43793400-43796000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr18:43793400-43796000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr18:43794000-43796000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr18:43794200-43796000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr18:43794400-43796000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr18:43794400-43796000	Weak transcription	Brain Angular Gyrus	brain
43	chr18:43794400-43800200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr18:43794400-43801600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr18:43794600-43796000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr18:43794600-43796200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr18:43794600-43796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr18:43794600-43801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr18:43794800-43796400	Enhancers	Right Ventricle	heart
50	chr18:43794800-43797400	Weak transcription	Colonic Mucosa	Colon

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