Variant report

Variant	rs61737340
Chromosome Location	chr6:28228209-28228210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28228206-28228256	HMEC	breast:	n/a
2	chr6:28228206-28228256	NH-A	brain:	n/a
3	chr6:28228206-28228256	U87	brain:	n/a
4	chr6:28228206-28228256	H1-hESC	embryonic stem cell:	embryo
5	chr6:28228206-28228256	HRE	kidney:	n/a
6	chr6:28228206-28228256	HCPEpiC	choroid plexus:	n/a
7	chr6:28228206-28228256	HNPCEpiC	eye:	n/a
8	chr6:28228206-28228256	GM12892	blood:	n/a
9	chr6:28228206-28228256	SKMC	muscle:	n/a
10	chr6:28228206-28228256	HAEpiC	amniotic membrane:	n/a
11	chr6:28228206-28228256	Hepatocyte	liver:	n/a
12	chr6:28228206-28228256	A549	lung:	n/a
13	chr6:28228206-28228256	HIPEpiC	eye:	n/a
14	chr6:28228206-28228256	MCF10A-Er-Src	breast:	n/a
15	chr6:28228206-28228256	HEEpiC	esophagus:	n/a
16	chr6:28228206-28228256	RPTEC	kidney:	n/a
17	chr6:28228206-28228256	GM12891	blood:	n/a
18	chr6:28228206-28228256	HepG2	liver:	n/a
19	chr6:28228206-28228256	ECC-1	luminal epithelium:	n/a
20	chr6:28228206-28228256	SK-N-SH_RA	brain:	n/a
21	chr6:28228206-28228256	HRPEpiC	eye:	n/a
22	chr6:28228206-28228256	Jurkat	blood:	n/a
23	chr6:28228206-28228256	AG04450	lung:	fetal
24	chr6:28228206-28228256	PANC-1	pancreas:	n/a
25	chr6:28228206-28228256	NB4	blood:	n/a
26	chr6:28228206-28228256	BE2_C	brain:	n/a
27	chr6:28228206-28228256	NHDF-neo	bronchial:	n/a
28	chr6:28228206-28228256	SK-N-MC	brain:	n/a
29	chr6:28228206-28228256	Hela-S3	cervix:	n/a
30	chr6:28228206-28228256	ovcar-3	ovarian:	n/a
31	chr6:28228206-28228256	Caco-2	colon:	n/a
32	chr6:28228206-28228256	HPAEpiC	pulmonary alveolar:	n/a
33	chr6:28228206-28228256	GM19239	blood:	n/a
34	chr6:28228206-28228256	T-47D	breast:	n/a
35	chr6:28228206-28228256	HCM	heart:	n/a
36	chr6:28228206-28228256	AG10803	skin:	n/a
37	chr6:28228206-28228256	PFSK-1	brain:	n/a
38	chr6:28228206-28228256	SK-N-SH	brain:	n/a
39	chr6:28228206-28228256	PrEC	prostate:	n/a
40	chr6:28228206-28228256	HCT-116	colon:	n/a
41	chr6:28228206-28228256	NHBE	bronchial:	n/a
42	chr6:28228206-28228256	GM06990	blood:	n/a
43	chr6:28228206-28228256	CMK	blood:	n/a
44	chr6:28228206-28228256	BJ	skin:	n/a
45	chr6:28228206-28228256	AG09309	skin:	n/a
46	chr6:28228206-28228256	AoSMC	blood vessel:	n/a
47	chr6:28228206-28228256	AG04449	skin:	fetal
48	chr6:28228206-28228256	ProgFib	skin:	n/a
49	chr6:28228206-28228256	K562	blood:	n/a
50	chr6:28228206-28228256	MCF-7	breast:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28226019..28228390-chr6:28303494..28305290,2	K562	blood:
2	chr6:28217539..28222258-chr6:28227412..28230016,4	MCF-7	breast:
3	chr6:28184440..28186086-chr6:28227732..28230449,2	K562	blood:
4	chr6:28228030..28230750-chr6:28318492..28321168,2	K562	blood:

No data

Variant related genes	Relation type
ZKSCAN4	CpG island
ENSG00000187626	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16893804	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28226600-28228400	Active TSS	Psoas Muscle	Psoas
2	chr6:28227000-28228400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:28227000-28232000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:28227000-28233800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:28227400-28234400	Weak transcription	HSMMtube	muscle
6	chr6:28227600-28228400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:28227600-28229800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:28227600-28231600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:28227600-28231600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:28227600-28233600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:28227600-28233800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:28227600-28233800	Weak transcription	HMEC	breast
13	chr6:28227800-28231600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:28227800-28234400	Weak transcription	Right Atrium	heart
15	chr6:28228000-28228400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr6:28228200-28229600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:28228200-28229800	Weak transcription	Right Ventricle	heart
18	chr6:28228200-28234600	Weak transcription	Left Ventricle	heart

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