Variant report

Variant	rs61737776
Chromosome Location	chr22:29706927-29706928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29704698..29709036-chr22:29709270..29712865,10	MCF-7	breast:
2	chr22:29663790..29666249-chr22:29704242..29708353,4	K562	blood:

Variant related genes	Relation type
ENSG00000182944	Chromatin interaction
ENSG00000100263	Chromatin interaction
ENSG00000100276	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59999468	1.00[AMR][1000 genomes]
rs61065920	1.00[AMR][1000 genomes]
rs73884709	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73884715	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv829154	chr22:29617485-29724001	Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv834171	chr22:29626402-29829844	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv829155	chr22:29664396-29724001	Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv529742	chr22:29677909-30274388	Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv914959	chr22:29696438-29712874	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv914960	chr22:29696438-29714069	Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29702000-29707800	Enhancers	Fetal Heart	heart
2	chr22:29703200-29707600	Enhancers	Fetal Brain Male	brain
3	chr22:29703600-29707600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr22:29703600-29707800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr22:29703600-29708000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr22:29703800-29707000	Genic enhancers	Fetal Intestine Small	intestine
7	chr22:29703800-29707000	Enhancers	Small Intestine	intestine
8	chr22:29703800-29707600	Enhancers	Fetal Intestine Large	intestine
9	chr22:29703800-29708000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr22:29703800-29708400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr22:29703800-29709400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr22:29704000-29707600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr22:29704000-29707800	Enhancers	Ovary	ovary
14	chr22:29704000-29709600	Enhancers	Placenta	Placenta
15	chr22:29704200-29708800	Genic enhancers	Fetal Muscle Leg	muscle
16	chr22:29704400-29707400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr22:29704400-29707800	Enhancers	Lung	lung
18	chr22:29704400-29708000	Enhancers	Pancreas	Pancrea
19	chr22:29704400-29708600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr22:29704600-29707600	Enhancers	Spleen	Spleen
21	chr22:29704600-29707800	Enhancers	Gastric	stomach
22	chr22:29704600-29708000	Genic enhancers	NHLF	lung
23	chr22:29705200-29707200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr22:29705200-29707400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr22:29705200-29708000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr22:29705200-29708000	Enhancers	Esophagus	oesophagus
27	chr22:29705400-29707000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr22:29705400-29707400	Enhancers	K562	blood
29	chr22:29705400-29707600	Enhancers	HepG2	liver
30	chr22:29705400-29708200	Enhancers	Stomach Mucosa	stomach
31	chr22:29705600-29707200	Enhancers	Adipose Nuclei	Adipose
32	chr22:29705600-29707200	Enhancers	Fetal Brain Female	brain
33	chr22:29705600-29707400	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr22:29705600-29708600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr22:29705800-29707000	Enhancers	Brain Cingulate Gyrus	brain
36	chr22:29705800-29707000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr22:29705800-29707200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr22:29705800-29707200	Enhancers	Right Atrium	heart
39	chr22:29705800-29707200	Enhancers	Right Ventricle	heart
40	chr22:29705800-29707600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr22:29705800-29707600	Enhancers	Left Ventricle	heart
42	chr22:29705800-29707800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr22:29705800-29708000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr22:29706000-29707200	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr22:29706000-29707200	Enhancers	HSMM	muscle
46	chr22:29706000-29707800	Enhancers	HUVEC	blood vessel
47	chr22:29706200-29707400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr22:29706200-29707400	Enhancers	Liver	Liver
49	chr22:29706200-29707600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr22:29706200-29708000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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