Variant report

Variant	rs61739178
Chromosome Location	chr7:51097255-51097256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11238396	1.00[AFR][1000 genomes]
rs62449461	1.00[AFR][1000 genomes]
rs6961183	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2761146	chr7:50975457-51957019	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1027122	chr7:50984824-51376078	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv538836	chr7:50984824-51376078	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv830999	chr7:51020735-51164809	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1015410	chr7:51061988-51532557	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv538837	chr7:51061988-51532557	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:51085000-51100200	Strong transcription	Liver	Liver
2	chr7:51088600-51098600	Weak transcription	Fetal Heart	heart
3	chr7:51089000-51101600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:51089400-51097400	Strong transcription	Brain Hippocampus Middle	brain
5	chr7:51089400-51098800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:51089400-51100000	Strong transcription	Fetal Intestine Small	intestine
7	chr7:51089600-51097400	Strong transcription	Gastric	stomach
8	chr7:51090600-51097400	Strong transcription	Brain Cingulate Gyrus	brain
9	chr7:51090800-51101400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:51091000-51098400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:51091400-51101800	Weak transcription	Colonic Mucosa	Colon
12	chr7:51091800-51097800	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr7:51092200-51099000	Strong transcription	Brain Anterior Caudate	brain
14	chr7:51092200-51099200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:51092200-51099200	Genic enhancers	Pancreas	Pancrea
16	chr7:51092400-51099000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:51092400-51099000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr7:51092400-51099200	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr7:51092600-51098000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr7:51092800-51113000	Weak transcription	Esophagus	oesophagus
21	chr7:51093200-51097400	Strong transcription	Fetal Intestine Large	intestine
22	chr7:51093400-51097600	Strong transcription	Stomach Smooth Muscle	stomach
23	chr7:51093800-51101600	Weak transcription	Right Atrium	heart
24	chr7:51094600-51101600	Weak transcription	Stomach Mucosa	stomach
25	chr7:51094800-51101800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:51095000-51099000	Strong transcription	Hela-S3	cervix
27	chr7:51095000-51099200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:51095600-51097600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:51095800-51101600	Weak transcription	Right Ventricle	heart
30	chr7:51095800-51104400	Enhancers	NHDF-Ad	bronchial
31	chr7:51096000-51097800	Enhancers	Fetal Muscle Leg	muscle
32	chr7:51096000-51098800	Enhancers	Osteobl	bone
33	chr7:51096000-51103400	Weak transcription	Placenta	Placenta
34	chr7:51096200-51098400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:51096200-51099600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:51096400-51098800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:51096400-51099200	Enhancers	NHLF	lung
38	chr7:51096400-51101400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:51096400-51101600	Weak transcription	Lung	lung
40	chr7:51096600-51098800	Enhancers	NH-A	brain
41	chr7:51096600-51101600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr7:51096800-51097400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:51096800-51097400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:51096800-51097800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:51096800-51101800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:51097000-51097800	Enhancers	HSMM	muscle
47	chr7:51097000-51098200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:51097000-51098600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:51097000-51101200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:51097000-51102000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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