Variant report

Variant	rs61739238
Chromosome Location	chr6:4996644-4996645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4982368..4985908-chr6:4994564..4997355,3	K562	blood:
2	chr6:4995264..4998093-chr6:5000328..5002613,2	K562	blood:
3	chr6:4994742..4997035-chr6:4997235..4999269,2	MCF-7	breast:
4	chr6:4995350..4999541-chr6:5000920..5005585,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124787	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55728654	1.00[AMR][1000 genomes]
rs61473991	1.00[AMR][1000 genomes]
rs73719720	1.00[AMR][1000 genomes]
rs9502246	1.00[AMR][1000 genomes]
rs9504272	1.00[AMR][1000 genomes]
rs9504274	1.00[AMR][1000 genomes]
rs9504280	1.00[AMR][1000 genomes]
rs9504288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1033905	chr6:4955826-5080904	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4983000-4997600	Weak transcription	Psoas Muscle	Psoas
2	chr6:4985600-4997000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:4985600-4997000	Weak transcription	Gastric	stomach
4	chr6:4985600-5001000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:4985600-5003000	Weak transcription	HUVEC	blood vessel
6	chr6:4985600-5003200	Weak transcription	Hela-S3	cervix
7	chr6:4985800-5003600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:4987600-5003000	Weak transcription	GM12878-XiMat	blood
9	chr6:4987600-5003600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:4988000-5001400	Weak transcription	NHEK	skin
11	chr6:4988200-5003600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:4988800-5001200	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:4988800-5001200	Weak transcription	K562	blood
14	chr6:4988800-5003600	Weak transcription	HMEC	breast
15	chr6:4989200-5003600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:4990000-5003600	Weak transcription	Fetal Lung	lung
17	chr6:4990200-5001200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:4990400-5001200	Weak transcription	A549	lung
19	chr6:4990400-5003600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:4990400-5003600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:4990800-5003000	Weak transcription	Fetal Heart	heart
22	chr6:4990800-5003600	Weak transcription	Right Ventricle	heart
23	chr6:4991000-5002600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:4991200-5002400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:4991400-4998000	Weak transcription	Osteobl	bone
26	chr6:4991400-5001200	Weak transcription	HSMMtube	muscle
27	chr6:4991800-4997400	Weak transcription	Brain Anterior Caudate	brain
28	chr6:4992200-5003400	Weak transcription	NH-A	brain
29	chr6:4992400-5003600	Weak transcription	Small Intestine	intestine
30	chr6:4992800-5003600	Weak transcription	Brain Germinal Matrix	brain
31	chr6:4993000-4998000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:4993000-5001000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:4993000-5003600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:4993200-4997000	Weak transcription	Colonic Mucosa	Colon
35	chr6:4993200-4997200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:4993400-5001000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:4993400-5002400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:4993400-5003400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:4993600-4998400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:4993600-4999200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:4993600-5001000	Weak transcription	Brain Angular Gyrus	brain
42	chr6:4993600-5003600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:4993600-5003600	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:4993800-4998400	Strong transcription	Primary T cells from cord blood	blood
45	chr6:4994000-4998800	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:4994400-4999800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:4994400-5003600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:4994600-4997800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:4994600-4998200	Strong transcription	Dnd41	blood
50	chr6:4994600-4998400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links