Variant report

Variant	rs61740792
Chromosome Location	chr7:99123992-99123993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99123222..99123996-chr7:99213737..99214529,2	MCF-7	breast:
2	chr7:99122361..99125551-chr7:99169280..99172960,3	K562	blood:
3	chr7:99122366..99125169-chr7:99126048..99128824,3	K562	blood:
4	chr7:99122266..99124155-chr7:99149460..99151190,2	MCF-7	breast:
5	chr7:99100876..99102774-chr7:99122043..99124875,2	MCF-7	breast:
6	chr7:99123099..99124928-chr7:99132151..99133961,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221909	Chromatin interaction
ENSG00000196652	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1880211	1.00[AFR][1000 genomes]
rs2030537	0.86[AFR][1000 genomes]
rs45606735	1.00[AFR][1000 genomes]
rs45621231	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99103800-99125600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:99105000-99126000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:99105000-99126400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:99105000-99128000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:99105000-99128000	Weak transcription	Fetal Heart	heart
6	chr7:99105000-99128800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr7:99105000-99129400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:99105400-99125400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:99105400-99126200	Weak transcription	Stomach Mucosa	stomach
10	chr7:99105600-99124400	Weak transcription	Psoas Muscle	Psoas
11	chr7:99107000-99126000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:99107400-99126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:99107600-99126000	Strong transcription	Fetal Stomach	stomach
14	chr7:99108400-99126000	Strong transcription	Fetal Thymus	thymus
15	chr7:99108600-99125200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:99108600-99126200	Strong transcription	Dnd41	blood
17	chr7:99112400-99127400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:99113200-99127800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:99113600-99125600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:99114800-99126400	Weak transcription	Fetal Brain Male	brain
21	chr7:99116800-99126200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr7:99117000-99125400	Strong transcription	Liver	Liver
23	chr7:99117000-99125600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:99117000-99126000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr7:99117000-99126200	Strong transcription	HSMMtube	muscle
26	chr7:99117200-99125800	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:99118000-99125800	Weak transcription	Fetal Kidney	kidney
28	chr7:99118000-99128200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr7:99118400-99124600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr7:99119400-99126800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:99119600-99125400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr7:99119600-99126000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:99120000-99125800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:99120000-99127400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr7:99120800-99127200	Strong transcription	Osteobl	bone
36	chr7:99121400-99127200	Strong transcription	NHDF-Ad	bronchial
37	chr7:99121800-99128400	Strong transcription	Brain Anterior Caudate	brain
38	chr7:99122000-99125200	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr7:99122000-99126200	Strong transcription	Adipose Nuclei	Adipose
40	chr7:99122200-99124200	Strong transcription	Brain Hippocampus Middle	brain
41	chr7:99122200-99124600	Strong transcription	HUVEC	blood vessel
42	chr7:99122200-99125000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:99122200-99125000	Strong transcription	GM12878-XiMat	blood
44	chr7:99122200-99125800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:99122200-99126000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:99122200-99126200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:99122400-99124400	Strong transcription	Brain Germinal Matrix	brain
48	chr7:99122400-99124400	Strong transcription	Right Ventricle	heart
49	chr7:99122400-99124400	Strong transcription	Spleen	Spleen
50	chr7:99122400-99125200	Strong transcription	Primary B cells from cord blood	blood

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