Variant report

Variant	rs61741225
Chromosome Location	chr5:16565892-16565893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10452497	1.00[AMR][1000 genomes]
rs55987339	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:16542600-16567200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr5:16543200-16591600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:16543600-16589800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:16545000-16574600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:16549200-16569000	Weak transcription	Left Ventricle	heart
7	chr5:16549200-16580200	Weak transcription	Gastric	stomach
8	chr5:16553000-16568600	Weak transcription	NHDF-Ad	bronchial
9	chr5:16553000-16573400	Weak transcription	Fetal Intestine Small	intestine
10	chr5:16553400-16569600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:16553400-16572800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr5:16555200-16571400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:16556400-16569600	Weak transcription	Primary B cells from cord blood	blood
14	chr5:16556800-16567600	Weak transcription	Fetal Thymus	thymus
15	chr5:16558000-16569000	Weak transcription	Brain Germinal Matrix	brain
16	chr5:16559400-16568200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr5:16559600-16574400	Weak transcription	Fetal Brain Female	brain
18	chr5:16560800-16566200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:16561200-16567200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:16561200-16574400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:16564200-16567000	Enhancers	Fetal Heart	heart
22	chr5:16564400-16566000	Enhancers	Brain Angular Gyrus	brain
23	chr5:16564400-16566400	Enhancers	Brain Cingulate Gyrus	brain
24	chr5:16564400-16567400	Strong transcription	Primary T cells from cord blood	blood
25	chr5:16564400-16571400	Enhancers	Brain Hippocampus Middle	brain
26	chr5:16564400-16571600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:16564600-16566000	Enhancers	Fetal Brain Male	brain
28	chr5:16564600-16566200	Enhancers	Psoas Muscle	Psoas
29	chr5:16565000-16567200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:16565000-16567400	Weak transcription	Right Atrium	heart
31	chr5:16565000-16567600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:16565200-16566000	Enhancers	Right Ventricle	heart
33	chr5:16565200-16567000	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr5:16565200-16567400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:16565400-16567400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr5:16565400-16569000	Weak transcription	Thymus	Thymus
37	chr5:16565600-16567000	Weak transcription	Brain Anterior Caudate	brain
38	chr5:16565600-16567200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr5:16565600-16569200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr5:16565600-16573600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr5:16565800-16567000	Weak transcription	Brain Substantia Nigra	brain

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