Variant report

Variant	rs61741411
Chromosome Location	chr6:134350656-134350657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134344567..134346471-chr6:134350446..134352448,2	MCF-7	breast:
2	chr6:134345844..134348378-chr6:134349691..134351892,2	K562	blood:
3	chr6:134349888..134351478-chr6:134356973..134359120,2	MCF-7	breast:
4	chr6:134276652..134279783-chr6:134349366..134352805,3	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9389131	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
2	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
4	chr6:134336400-134353000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:134339200-134356000	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:134342000-134361600	Weak transcription	Gastric	stomach
7	chr6:134342200-134355600	Weak transcription	Fetal Heart	heart
8	chr6:134342400-134351200	Weak transcription	Right Ventricle	heart
9	chr6:134342800-134352000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:134343200-134355800	Weak transcription	Lung	lung
11	chr6:134346400-134351200	Weak transcription	Brain Substantia Nigra	brain
12	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:134346600-134351200	Weak transcription	Brain Angular Gyrus	brain
14	chr6:134347800-134350800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:134348000-134351200	Weak transcription	NHLF	lung
16	chr6:134348000-134357600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:134348200-134350800	Weak transcription	HMEC	breast
18	chr6:134348200-134351000	Weak transcription	NH-A	brain
19	chr6:134348200-134351200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:134348200-134351200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:134348200-134354600	Weak transcription	Pancreas	Pancrea
22	chr6:134348200-134356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:134348400-134356000	Weak transcription	Psoas Muscle	Psoas
24	chr6:134348600-134356400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:134348600-134356400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:134348600-134356800	Weak transcription	Fetal Intestine Small	intestine
27	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:134348800-134351800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:134349000-134351600	Weak transcription	Fetal Stomach	stomach
30	chr6:134349000-134352400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:134349200-134350800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:134349200-134350800	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:134349600-134350800	Strong transcription	Aorta	Aorta
34	chr6:134349600-134351000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr6:134349600-134352000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr6:134350000-134351200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:134350000-134351600	Enhancers	A549	lung
38	chr6:134350000-134356000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:134350200-134351200	Enhancers	K562	blood
40	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:134350400-134351600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr6:134350400-134352000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:134350600-134350800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:134350600-134350800	Genic enhancers	Brain Cingulate Gyrus	brain
45	chr6:134350600-134351200	Weak transcription	Brain Anterior Caudate	brain
46	chr6:134350600-134351200	Weak transcription	Left Ventricle	heart
47	chr6:134350600-134351600	Enhancers	Brain Hippocampus Middle	brain
48	chr6:134350600-134351600	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr6:134350600-134351600	Enhancers	Osteobl	bone
50	chr6:134350600-134352200	Enhancers	Fetal Lung	lung

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