Variant report

Variant	rs61742087
Chromosome Location	chr9:115652463-115652464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10124939	0.89[ASN][1000 genomes]
rs10739380	0.89[ASN][1000 genomes]
rs4978511	0.89[ASN][1000 genomes]
rs7028375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422302	chr9:115550339-115656433	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2757352	chr9:115648457-115664299	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115624200-115652600	Weak transcription	Fetal Heart	heart
2	chr9:115633000-115652600	Weak transcription	Left Ventricle	heart
3	chr9:115633800-115652600	Weak transcription	Liver	Liver
4	chr9:115643200-115652600	Weak transcription	Brain Anterior Caudate	brain
5	chr9:115643200-115652800	Weak transcription	Ovary	ovary
6	chr9:115643600-115652600	Weak transcription	Brain Angular Gyrus	brain
7	chr9:115644000-115652800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:115644200-115652600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:115647000-115652800	Weak transcription	HSMMtube	muscle
10	chr9:115647200-115652600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:115647400-115652600	Weak transcription	HMEC	breast
12	chr9:115647400-115652600	Weak transcription	HSMM	muscle
13	chr9:115649800-115652600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr9:115650800-115653000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr9:115651600-115652600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:115651800-115652800	Bivalent Enhancer	Primary B cells from cord blood	blood
17	chr9:115651800-115652800	Weak transcription	Right Atrium	heart
18	chr9:115651800-115653000	Bivalent/Poised TSS	Fetal Thymus	thymus
19	chr9:115652000-115652600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr9:115652000-115652800	Enhancers	Pancreas	Pancrea
21	chr9:115652200-115652600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr9:115652200-115652600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:115652200-115652600	Enhancers	Gastric	stomach
24	chr9:115652200-115652800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:115652200-115653000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:115652200-115653200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:115652200-115653600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr9:115652200-115653600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr9:115652400-115652600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
30	chr9:115652400-115652600	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
31	chr9:115652400-115652600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
32	chr9:115652400-115652600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:115652400-115652600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
34	chr9:115652400-115652600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:115652400-115652600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:115652400-115652600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:115652400-115652600	Enhancers	Brain Hippocampus Middle	brain
38	chr9:115652400-115652600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:115652400-115652600	Enhancers	Brain Substantia Nigra	brain
40	chr9:115652400-115652600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
41	chr9:115652400-115652600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
42	chr9:115652400-115652600	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr9:115652400-115652600	Bivalent Enhancer	Placenta	Placenta
44	chr9:115652400-115652800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:115652400-115652800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:115652400-115652800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
47	chr9:115652400-115652800	Bivalent Enhancer	Fetal Intestine Small	intestine
48	chr9:115652400-115652800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
49	chr9:115652400-115652800	Flanking Bivalent TSS/Enh	Spleen	Spleen
50	chr9:115652400-115652800	Bivalent/Poised TSS	A549	lung

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