Variant report

Variant	rs61742424
Chromosome Location	chr6:150285262-150285263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150285227..150287207-chr6:150324215..150327395,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11961533	0.86[AFR][1000 genomes]
rs11963412	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150284000-150286600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150284200-150285400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150284200-150285600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr6:150284200-150285600	Active TSS	A549	lung
5	chr6:150284200-150285800	Flanking Active TSS	Dnd41	blood
6	chr6:150284200-150286000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:150284200-150286200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:150284200-150286400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
9	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
10	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
11	chr6:150284200-150286600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
12	chr6:150284200-150286800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:150284200-150286800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr6:150284200-150286800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:150284200-150287000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr6:150284400-150285400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
17	chr6:150284400-150285400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:150284400-150285400	Bivalent/Poised TSS	Fetal Brain Female	brain
19	chr6:150284400-150285600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:150284400-150285800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
21	chr6:150284400-150285800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
22	chr6:150284400-150285800	Active TSS	Hela-S3	cervix
23	chr6:150284400-150286200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
24	chr6:150284400-150286400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
26	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
27	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
28	chr6:150284400-150286400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
29	chr6:150284400-150286600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
31	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
32	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
34	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
35	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
36	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
37	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	Placenta	Placenta
38	chr6:150284400-150286600	Bivalent/Poised TSS	Psoas Muscle	Psoas
39	chr6:150284400-150286600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
40	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
42	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
43	chr6:150284400-150286800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
44	chr6:150284600-150285400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
45	chr6:150284600-150285400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:150284600-150285400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:150284600-150285400	Flanking Active TSS	Liver	Liver
48	chr6:150284600-150285400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
49	chr6:150284600-150285400	Bivalent/Poised TSS	NHEK	skin
50	chr6:150284600-150285800	Bivalent/Poised TSS	Brain Substantia Nigra	brain

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