Variant report

Variant	rs61742445
Chromosome Location	chr6:27107393-27107394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26285002..26287189-chr6:27105491..27107872,2	K562	blood:
2	chr6:27104100..27108145-chr6:27797427..27800059,3	K562	blood:
3	chr6:27103857..27108544-chr6:27789458..27794450,6	K562	blood:
4	chr6:27106932..27107845-chr7:152160856..152161752,2	Hela-S3	cervix:
5	chr6:26196890..26209578-chr6:27096615..27108451,46	K562	blood:
6	chr6:27094943..27118570-chr6:27854106..27868030,101	K562	blood:
7	chr6:26197700..26201009-chr6:27106361..27108760,3	K562	blood:
8	chr6:27094718..27095470-chr6:27107120..27107643,3	K562	blood:
9	chr19:13261109..13261760-chr6:27106968..27107546,2	Hela-S3	cervix:
10	chr6:26248693..26251419-chr6:27106113..27108682,2	K562	blood:
11	chr6:26029982..26034393-chr6:27104962..27111668,7	K562	blood:
12	chr6:26214207..26218801-chr6:27106442..27111603,7	MCF-7	breast:
13	chr6:26595534..26598582-chr6:27105401..27109406,3	K562	blood:
14	chr6:27093465..27120217-chr6:27768366..27817187,256	K562	blood:
15	chr6:27104887..27109324-chr6:27780147..27783327,4	MCF-7	breast:
16	chr1:153507922..153508745-chr6:27106854..27107517,2	Hela-S3	cervix:
17	chr6:26285002..26288145-chr6:27106372..27109970,3	K562	blood:
18	chr1:153642877..153643597-chr6:27107067..27107662,2	Hela-S3	cervix:
19	chr6:27105394..27120060-chr6:27855994..27866393,42	K562	blood:
20	chr6:26162758..26165720-chr6:27106802..27109044,2	MCF-7	breast:
21	chr6:26029982..26033364-chr6:27104962..27109285,6	K562	blood:
22	chr12:111180057..111180751-chr6:27107062..27107721,2	Hela-S3	cervix:
23	chr6:26204311..26207640-chr6:27105695..27109383,4	K562	blood:
24	chr10:32735153..32735692-chr6:27106612..27107530,2	Hela-S3	cervix:
25	chr6:27093369..27111594-chr6:27770152..27782376,64	K562	blood:
26	chr1:11967903..11968868-chr6:27107029..27107545,2	Hela-S3	cervix:
27	chr6:26214554..26217001-chr6:27106278..27109179,2	MCF-7	breast:
28	chr6:27105570..27109142-chr6:27832678..27836176,3	K562	blood:
29	chr5:271557..272161-chr6:27107068..27107579,2	Hela-S3	cervix:
30	chr15:65587975..65588961-chr6:27106719..27107655,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000216937	Chromatin interaction
ENSG00000248925	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000143621	Chromatin interaction
ENSG00000217275	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000198374	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000104915	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000160888	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000261455	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000249915	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000186298	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000217159	Chromatin interaction
ENSG00000197956	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000199568	Chromatin interaction
ENSG00000187990	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16895205	1.00[EUR][1000 genomes]
rs5030966	1.00[EUR][1000 genomes]
rs56315373	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56355023	1.00[AMR][1000 genomes]
rs57568239	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59813908	1.00[EUR][1000 genomes]
rs59886985	1.00[EUR][1000 genomes]
rs73738714	1.00[EUR][1000 genomes]
rs73738743	1.00[EUR][1000 genomes]
rs73739512	1.00[AMR][1000 genomes]
rs73739518	1.00[AMR][1000 genomes]
rs73739523	1.00[AMR][1000 genomes]
rs73739538	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739597	1.00[EUR][1000 genomes]
rs73740430	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1029124	chr6:26825468-27109774	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	244 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27101800-27112800	Weak transcription	HSMMtube	muscle
2	chr6:27102200-27112600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:27105800-27108200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:27106200-27109200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr6:27106400-27107400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:27106400-27108400	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr6:27106600-27107600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:27106600-27108000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:27106600-27108000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr6:27106600-27108200	Active TSS	Fetal Stomach	stomach
11	chr6:27106600-27108800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:27106600-27108800	Active TSS	K562	blood
13	chr6:27106600-27110200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:27106800-27107400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:27106800-27107400	Active TSS	Primary monocytes fromperipheralblood	blood
16	chr6:27106800-27107400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
17	chr6:27106800-27107400	Active TSS	Fetal Muscle Trunk	muscle
18	chr6:27106800-27107600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:27106800-27107600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:27106800-27107600	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr6:27106800-27107600	Active TSS	Fetal Brain Male	brain
22	chr6:27106800-27107600	Active TSS	Fetal Brain Female	brain
23	chr6:27106800-27107600	Active TSS	Fetal Intestine Large	intestine
24	chr6:27106800-27107600	Active TSS	Fetal Muscle Leg	muscle
25	chr6:27106800-27107600	Active TSS	Stomach Smooth Muscle	stomach
26	chr6:27106800-27107800	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr6:27106800-27107800	Active TSS	Liver	Liver
28	chr6:27106800-27107800	Active TSS	Brain Anterior Caudate	brain
29	chr6:27106800-27107800	Active TSS	Placenta Amnion	Placenta Amnion
30	chr6:27106800-27107800	Active TSS	NHDF-Ad	bronchial
31	chr6:27106800-27108000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:27106800-27108000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr6:27106800-27108000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr6:27106800-27108000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:27106800-27108000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:27106800-27108000	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr6:27106800-27108000	Active TSS	Rectal Smooth Muscle	rectum
38	chr6:27106800-27108000	Active TSS	Right Ventricle	heart
39	chr6:27106800-27108000	Flanking Active TSS	NH-A	brain
40	chr6:27106800-27108000	Flanking Active TSS	NHEK	skin
41	chr6:27106800-27108200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr6:27106800-27108200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:27106800-27108200	Active TSS	Brain Germinal Matrix	brain
44	chr6:27106800-27108200	Active TSS	Duodenum Mucosa	Duodenum
45	chr6:27106800-27108200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr6:27106800-27108200	Active TSS	Fetal Kidney	kidney
47	chr6:27106800-27108200	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr6:27106800-27108200	Flanking Active TSS	Thymus	Thymus
49	chr6:27106800-27108200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr6:27106800-27108400	Flanking Active TSS	HUVEC	blood vessel

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