Variant report

Variant	rs61742784
Chromosome Location	chr6:44255387-44255388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1044690	0.87[ASN][1000 genomes]
rs2233424	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2233433	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2233434	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2236500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28362854	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28362855	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28362856	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28362859	0.86[EUR][1000 genomes]
rs35623954	0.94[EUR][1000 genomes]
rs3734708	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3734709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799963	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41282670	0.94[EUR][1000 genomes]
rs41282672	0.81[ASN][1000 genomes]
rs60453984	0.91[EUR][1000 genomes]
rs6458377	0.91[EUR][1000 genomes]
rs9688508	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462936	chr6:44191920-44282316	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv603004	chr6:44191920-44282316	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
4	nsv885853	chr6:44197181-44274797	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv885854	chr6:44211867-44274797	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	nsv462937	chr6:44211867-44279111	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
7	nsv603005	chr6:44211867-44279111	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44244400-44257400	Weak transcription	Pancreas	Pancrea
2	chr6:44244400-44264800	Weak transcription	Right Atrium	heart
3	chr6:44246400-44255400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:44246800-44255400	Weak transcription	Brain Germinal Matrix	brain
5	chr6:44252600-44257400	Weak transcription	Brain Anterior Caudate	brain
6	chr6:44253600-44255400	Weak transcription	Fetal Brain Female	brain
7	chr6:44254200-44257200	Weak transcription	Spleen	Spleen
8	chr6:44254600-44258600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:44255000-44258800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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