Variant report

Variant	rs61743935
Chromosome Location	chr11:8662649-8662650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11825777	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61741649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7101911	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7110224	1.00[AFR][1000 genomes]
rs7114215	0.92[EUR][1000 genomes]
rs7118686	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7121168	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7128811	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
2	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
3	chr11:8641800-8666200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:8644800-8663400	Weak transcription	Fetal Lung	lung
5	chr11:8644800-8667000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:8646200-8671000	Weak transcription	HUVEC	blood vessel
7	chr11:8646400-8666400	Weak transcription	HSMM	muscle
8	chr11:8649600-8665400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:8650800-8676200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:8652200-8675000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:8653400-8663800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:8653400-8664000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:8653400-8667000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:8654000-8673800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:8654200-8663200	Weak transcription	Fetal Brain Male	brain
16	chr11:8654200-8673800	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:8654200-8675600	Strong transcription	Stomach Smooth Muscle	stomach
18	chr11:8654400-8672400	Strong transcription	Brain Anterior Caudate	brain
19	chr11:8655000-8664200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:8655000-8664200	Strong transcription	Fetal Stomach	stomach
21	chr11:8655000-8670200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:8655000-8676400	Strong transcription	Primary T cells from cord blood	blood
23	chr11:8655200-8664200	Strong transcription	Brain Hippocampus Middle	brain
24	chr11:8655200-8664400	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:8655200-8664800	Strong transcription	Lung	lung
26	chr11:8655200-8665000	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr11:8655200-8672600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:8655400-8666600	Weak transcription	Fetal Thymus	thymus
29	chr11:8655400-8673400	Strong transcription	Dnd41	blood
30	chr11:8655600-8664400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr11:8655600-8670600	Strong transcription	Adipose Nuclei	Adipose
32	chr11:8656000-8670600	Strong transcription	Fetal Muscle Leg	muscle
33	chr11:8656000-8672600	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:8656000-8672800	Strong transcription	Placenta	Placenta
35	chr11:8656400-8662800	Strong transcription	Ovary	ovary
36	chr11:8656600-8671600	Strong transcription	Brain Cingulate Gyrus	brain
37	chr11:8656800-8666800	Weak transcription	HMEC	breast
38	chr11:8657000-8663400	Strong transcription	Pancreas	Pancrea
39	chr11:8657200-8663600	Weak transcription	Fetal Brain Female	brain
40	chr11:8657200-8673800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr11:8657400-8672600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:8658000-8666400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:8658000-8675200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:8658200-8672400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:8658200-8673800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:8658400-8664200	Strong transcription	Primary B cells from cord blood	blood
47	chr11:8658400-8664200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:8658400-8671200	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr11:8658400-8671600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:8658600-8673000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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