Variant report

Variant	rs61744791
Chromosome Location	chr14:24586567-24586568
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24586563-24588233	HepG2	liver:	n/a	n/a
2	SPI1	chr14:24586486-24586856	HL-60	blood:	n/a	chr14:24586671-24586684

No.	Distal block	Cell Line	Cell type
1	chr14:24581325..24587358-chr14:24608969..24612486,6	K562	blood:
2	chr14:24581756..24587936-chr14:24614253..24620861,10	K562	blood:
3	chr14:24581290..24596396-chr14:24599989..24617678,100	MCF-7	breast:
4	chr14:24581352..24586794-chr14:24656349..24659951,9	MCF-7	breast:
5	chr14:24582545..24585335-chr14:24585530..24587095,2	K562	blood:

Variant related genes	Relation type
ENSG00000259371	TF binding region
NRL	TF binding region
DCAF11	TF binding region
ENSG00000100911	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000092010	Chromatin interaction
ENSG00000259529	Chromatin interaction
ENSG00000139914	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000259522	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000259321	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11848386	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17101478	0.83[AFR][1000 genomes]
rs8012480	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs916154	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv869985	chr14:24578013-24652669	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24584800-24586600	Flanking Active TSS	Liver	Liver
2	chr14:24585200-24586600	Weak transcription	Aorta	Aorta
3	chr14:24585200-24587200	Weak transcription	HSMMtube	muscle
4	chr14:24585400-24586600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:24585400-24586600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:24585400-24586600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:24585400-24586600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:24585400-24586600	Weak transcription	Osteobl	bone
9	chr14:24585400-24586800	Enhancers	Psoas Muscle	Psoas
10	chr14:24585400-24586800	Enhancers	Small Intestine	intestine
11	chr14:24585400-24587000	Weak transcription	A549	lung
12	chr14:24585400-24587200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:24585400-24587200	Weak transcription	HUVEC	blood vessel
14	chr14:24585400-24587200	Weak transcription	NHLF	lung
15	chr14:24585400-24587400	Weak transcription	NH-A	brain
16	chr14:24585400-24588800	Weak transcription	NHDF-Ad	bronchial
17	chr14:24585600-24586600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:24585600-24586600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
19	chr14:24585600-24586800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr14:24585600-24586800	Transcr. at gene 5' and 3'	HepG2	liver
21	chr14:24585600-24587000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:24585600-24587000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
23	chr14:24585600-24587000	Genic enhancers	K562	blood
24	chr14:24585600-24588800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:24585600-24593400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr14:24585600-24593600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:24585800-24586600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:24585800-24586600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr14:24585800-24586600	Genic enhancers	Fetal Thymus	thymus
30	chr14:24585800-24586800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:24585800-24586800	Enhancers	Fetal Heart	heart
32	chr14:24585800-24586800	Genic enhancers	Placenta	Placenta
33	chr14:24585800-24586800	Genic enhancers	Thymus	Thymus
34	chr14:24585800-24587000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:24585800-24587000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr14:24585800-24587000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr14:24585800-24587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:24585800-24587000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:24585800-24587200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:24585800-24587200	Weak transcription	Brain Substantia Nigra	brain
41	chr14:24585800-24587200	Weak transcription	HMEC	breast
42	chr14:24585800-24587400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr14:24585800-24587400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:24585800-24587400	Weak transcription	Fetal Brain Male	brain
45	chr14:24585800-24587600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr14:24585800-24587800	Genic enhancers	Primary T cells fromperipheralblood	blood
47	chr14:24585800-24589200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:24585800-24593200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr14:24585800-24593600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr14:24585800-24593600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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