Variant report

Variant	rs61745968
Chromosome Location	chr19:53058841-53058842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr19:53058728-53059170	K562	blood:	n/a	n/a
2	POLR2A	chr19:53057768-53059600	GM12892	blood:	n/a	n/a
3	ZNF274	chr19:53058838-53059222	K562	blood:	n/a	n/a
4	POLR2A	chr19:53058314-53059456	K562	blood:	n/a	n/a
5	POLR2A	chr19:53058588-53059398	GM12878	blood:	n/a	n/a
6	POLR2A	chr19:53058081-53059544	GM12892	blood:	n/a	n/a
7	POLR2A	chr19:53058791-53059310	GM12892	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF83-6	chr19:53058370-53059548	NONHSAT067560

Variant related genes	Relation type
ZNF701	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61739360	1.00[AMR][1000 genomes]
rs73934546	1.00[AMR][1000 genomes]
rs73934549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580026	chr19:52937100-53059872	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1057296	chr19:52950339-53396986	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv978841	chr19:52983057-53088237	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv510772	chr19:53037211-53103470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1065584	chr19:53043126-53127459	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv833874	chr19:53058014-53257875	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53042000-53070400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:53042200-53068200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr19:53042600-53061200	ZNF genes & repeats	Liver	Liver
4	chr19:53044400-53059000	ZNF genes & repeats	GM12878-XiMat	blood
5	chr19:53044800-53061200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:53046200-53059800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr19:53046400-53059200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:53046400-53069200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr19:53047400-53068200	ZNF genes & repeats	Thymus	Thymus
10	chr19:53047800-53068600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr19:53048000-53066400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
12	chr19:53048600-53061200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
13	chr19:53049400-53063800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:53049600-53060400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
15	chr19:53050400-53065400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
16	chr19:53050400-53069200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr19:53050600-53061200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:53050800-53061200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr19:53051000-53061400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr19:53051000-53068000	ZNF genes & repeats	Fetal Intestine Large	intestine
21	chr19:53051200-53061200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr19:53051400-53059200	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr19:53051400-53068200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr19:53051600-53059600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr19:53051600-53061200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
26	chr19:53051600-53061200	ZNF genes & repeats	Adipose Nuclei	Adipose
27	chr19:53051600-53061400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:53051600-53061600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr19:53051600-53068000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr19:53051600-53068200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
31	chr19:53051600-53073200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr19:53052000-53059000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
33	chr19:53052000-53067400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
34	chr19:53052000-53067800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
35	chr19:53052200-53059000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr19:53052200-53059600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr19:53052200-53063400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
38	chr19:53052200-53067800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
39	chr19:53053200-53059600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr19:53053600-53067800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
41	chr19:53054000-53059400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
42	chr19:53054000-53060000	ZNF genes & repeats	Fetal Lung	lung
43	chr19:53054200-53061200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
44	chr19:53054200-53061200	ZNF genes & repeats	Left Ventricle	heart
45	chr19:53054600-53061000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
46	chr19:53054600-53064200	ZNF genes & repeats	Fetal Muscle Leg	muscle
47	chr19:53055200-53061200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
48	chr19:53055600-53059200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
49	chr19:53055800-53059200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr19:53055800-53059200	ZNF genes & repeats	K562	blood

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