Variant report

Variant	rs61746891
Chromosome Location	chr12:12186189-12186190
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:11733604..11734914-chr12:12185954..12186789,5	MCF-7	breast:
2	chr12:11706600..11707499-chr12:12186007..12186739,3	MCF-7	breast:
3	chr12:11706649..11707171-chr12:12186026..12186950,3	K562	blood:
4	chr12:12185994..12186506-chr12:12480467..12481001,2	K562	blood:
5	chr12:11801299..11805483-chr12:12183061..12186378,5	MCF-7	breast:
6	chr12:11733817..11734824-chr12:12186030..12186961,8	K562	blood:
7	chr12:12185974..12186612-chr12:12857331..12858218,2	K562	blood:

Variant related genes	Relation type
ENSG00000139083	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11054621	0.83[AMR][1000 genomes]
rs12370325	0.83[AMR][1000 genomes]
rs12370340	0.83[AMR][1000 genomes]
rs12372006	0.83[AMR][1000 genomes]
rs1797656	0.83[ASN][1000 genomes]
rs2430609	0.83[ASN][1000 genomes]
rs2448055	0.83[ASN][1000 genomes]
rs35659587	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12185200-12186200	Enhancers	Spleen	Spleen
2	chr12:12185200-12186400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:12185200-12186400	Enhancers	Small Intestine	intestine
4	chr12:12185200-12186600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:12185400-12186200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr12:12185400-12186400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:12185400-12186400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:12185400-12186400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:12185400-12186400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr12:12185400-12186400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr12:12185400-12186400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr12:12185400-12186600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:12185600-12186200	Flanking Active TSS	Fetal Intestine Small	intestine
14	chr12:12185600-12186400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr12:12185600-12186400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr12:12185600-12186400	Flanking Active TSS	Liver	Liver
17	chr12:12185600-12186400	Active TSS	Colon Smooth Muscle	Colon
18	chr12:12185600-12186400	Active TSS	Duodenum Mucosa	Duodenum
19	chr12:12185600-12186400	Flanking Active TSS	Fetal Thymus	thymus
20	chr12:12185600-12186400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr12:12185600-12186600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr12:12185600-12186600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr12:12185600-12186600	Active TSS	Rectal Smooth Muscle	rectum
24	chr12:12185800-12186200	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr12:12185800-12186200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr12:12185800-12186200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr12:12185800-12186200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:12185800-12186200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr12:12185800-12186200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
30	chr12:12185800-12186200	Enhancers	Lung	lung
31	chr12:12185800-12186200	Flanking Active TSS	NH-A	brain
32	chr12:12185800-12186400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:12185800-12186400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr12:12185800-12186400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr12:12185800-12186400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr12:12185800-12186400	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr12:12185800-12186400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:12185800-12186400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
39	chr12:12185800-12186400	Flanking Active TSS	Primary B cells from peripheral blood	blood
40	chr12:12185800-12186400	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr12:12185800-12186400	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr12:12185800-12186400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr12:12185800-12186400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr12:12185800-12186400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr12:12185800-12186400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr12:12185800-12186400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr12:12185800-12186400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr12:12185800-12186400	Active TSS	Aorta	Aorta
49	chr12:12185800-12186400	Active TSS	Brain Anterior Caudate	brain
50	chr12:12185800-12186400	Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links