Variant report

Variant	rs61747454
Chromosome Location	chr6:4892015-4892016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2063674	1.00[AMR][1000 genomes]
rs2063675	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4865600-4892200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:4872200-4898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:4874200-4894000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:4877000-4892400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:4877200-4892800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:4877400-4892200	Weak transcription	Esophagus	oesophagus
7	chr6:4878200-4905200	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:4879600-4906200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:4880400-4892200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:4880400-4907800	Weak transcription	Small Intestine	intestine
11	chr6:4880600-4898600	Weak transcription	HSMM	muscle
12	chr6:4881000-4892200	Weak transcription	Colonic Mucosa	Colon
13	chr6:4881000-4892600	Weak transcription	K562	blood
14	chr6:4881200-4892200	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:4881200-4893200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:4882600-4892200	Weak transcription	Brain Angular Gyrus	brain
17	chr6:4882600-4892600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:4882800-4894400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:4882800-4909000	Weak transcription	Brain Anterior Caudate	brain
20	chr6:4884000-4892200	Weak transcription	Gastric	stomach
21	chr6:4884000-4892200	Weak transcription	Right Ventricle	heart
22	chr6:4884000-4893000	Weak transcription	Thymus	Thymus
23	chr6:4884000-4898400	Weak transcription	Psoas Muscle	Psoas
24	chr6:4884200-4892200	Weak transcription	Pancreas	Pancrea
25	chr6:4884400-4892400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:4884800-4903800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr6:4885000-4892200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:4885000-4892200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:4885000-4908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:4885200-4892400	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:4887200-4901400	Weak transcription	HSMMtube	muscle
32	chr6:4888000-4892200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:4888000-4906400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:4889000-4892200	Weak transcription	Fetal Intestine Large	intestine
35	chr6:4889200-4906400	Weak transcription	NHLF	lung
36	chr6:4889400-4895800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:4889400-4898400	Weak transcription	Fetal Lung	lung
38	chr6:4889600-4892200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:4889600-4898400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:4890200-4892400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:4890200-4898800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr6:4890200-4901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:4890400-4892200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr6:4890400-4892200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:4890400-4892200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:4890400-4892200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:4890400-4892200	Weak transcription	Placenta	Placenta
48	chr6:4890400-4892200	Weak transcription	Lung	lung
49	chr6:4890400-4892600	Weak transcription	Brain Substantia Nigra	brain
50	chr6:4890400-4897800	Weak transcription	Primary hematopoietic stem cells	blood

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