Variant report

Variant	rs61747555
Chromosome Location	chr16:71885423-71885424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71840076..71845074-chr16:71882668..71886861,6	K562	blood:
2	chr16:71884164..71890391-chr16:71916479..71919375,6	K562	blood:
3	chr16:71884897..71886779-chr16:71887255..71889485,3	MCF-7	breast:
4	chr16:71884375..71886145-chr16:71899843..71902432,2	K562	blood:

Variant related genes	Relation type
ENSG00000182149	Chromatin interaction
ENSG00000102984	Chromatin interaction
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11642001	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv978166	chr16:71882680-71886018	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71881000-71902200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:71881200-71889400	Weak transcription	Psoas Muscle	Psoas
3	chr16:71881200-71916600	Weak transcription	Small Intestine	intestine
4	chr16:71881600-71885600	Weak transcription	Fetal Brain Male	brain
5	chr16:71881600-71887200	Weak transcription	Fetal Heart	heart
6	chr16:71881800-71886000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr16:71881800-71886000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr16:71881800-71886600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr16:71881800-71886600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr16:71881800-71887000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr16:71881800-71887200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr16:71881800-71887200	Strong transcription	Primary T cells from cord blood	blood
13	chr16:71881800-71887200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr16:71881800-71887400	Strong transcription	Fetal Intestine Large	intestine
15	chr16:71881800-71887800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr16:71881800-71887800	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr16:71881800-71888000	Strong transcription	NHEK	skin
18	chr16:71881800-71889200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr16:71881800-71890000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr16:71881800-71890200	Strong transcription	Placenta	Placenta
21	chr16:71881800-71890200	Strong transcription	Osteobl	bone
22	chr16:71881800-71890400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr16:71881800-71890800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr16:71881800-71890800	Strong transcription	Fetal Muscle Leg	muscle
25	chr16:71881800-71895800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr16:71881800-71897000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr16:71881800-71899000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr16:71881800-71902000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr16:71881800-71904600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr16:71881800-71914400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr16:71881800-71914600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr16:71882000-71885600	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr16:71882000-71885600	Strong transcription	Fetal Brain Female	brain
34	chr16:71882000-71885800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr16:71882000-71886000	Strong transcription	Colonic Mucosa	Colon
36	chr16:71882000-71887000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr16:71882000-71887200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr16:71882000-71887200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr16:71882000-71888200	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr16:71882000-71888600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr16:71882000-71889400	Strong transcription	Brain Anterior Caudate	brain
42	chr16:71882000-71890200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr16:71882000-71890400	Strong transcription	Primary hematopoietic stem cells	blood
44	chr16:71882000-71890600	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr16:71882000-71903800	Strong transcription	Brain Germinal Matrix	brain
46	chr16:71882000-71915600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr16:71882200-71885800	Strong transcription	Spleen	Spleen
48	chr16:71882200-71886400	Strong transcription	Primary B cells from cord blood	blood
49	chr16:71882200-71886400	Strong transcription	Rectal Smooth Muscle	rectum
50	chr16:71882200-71887200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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