Variant report

Variant	rs61747966
Chromosome Location	chr2:153442181-153442182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153437360..153438992-chr2:153441659..153443672,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRPF40A-1	chr2:153441933-153442437	NONHSAT074982

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7607120	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv834420	chr2:153339646-153535460	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153400000-153468200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:153403200-153448000	Weak transcription	Lung	lung
3	chr2:153404200-153442400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:153416400-153454200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:153416400-153465200	Weak transcription	Left Ventricle	heart
6	chr2:153418800-153444600	Weak transcription	Fetal Brain Male	brain
7	chr2:153420400-153443400	Weak transcription	Fetal Intestine Small	intestine
8	chr2:153423800-153471200	Weak transcription	Fetal Kidney	kidney
9	chr2:153428000-153468200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:153428200-153456000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:153429200-153456200	Weak transcription	Spleen	Spleen
12	chr2:153429600-153442200	Strong transcription	HepG2	liver
13	chr2:153430000-153449400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:153434200-153442600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:153434200-153473600	Weak transcription	Brain Germinal Matrix	brain
16	chr2:153434400-153454400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:153434600-153442400	Weak transcription	Small Intestine	intestine
18	chr2:153435400-153473200	Weak transcription	Right Ventricle	heart
19	chr2:153435600-153455200	Weak transcription	Hela-S3	cervix
20	chr2:153436600-153444800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr2:153438200-153456000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:153438400-153442600	Weak transcription	Adipose Nuclei	Adipose
23	chr2:153438400-153444200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:153438400-153475400	Weak transcription	Pancreas	Pancrea
25	chr2:153438600-153443400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:153438600-153444800	Weak transcription	Fetal Brain Female	brain
27	chr2:153438600-153456400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr2:153438600-153464000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:153438800-153448000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr2:153438800-153454400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr2:153438800-153463800	Weak transcription	Fetal Lung	lung
32	chr2:153439000-153442400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:153439000-153443600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:153439000-153445800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr2:153439000-153445800	Weak transcription	Placenta	Placenta
36	chr2:153439200-153442200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr2:153439400-153442400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr2:153439800-153456200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr2:153440000-153442600	Weak transcription	Brain Anterior Caudate	brain
40	chr2:153440000-153442800	Weak transcription	Right Atrium	heart
41	chr2:153440000-153444800	Enhancers	Osteobl	bone
42	chr2:153440200-153444600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr2:153440200-153444600	Enhancers	NH-A	brain
44	chr2:153440200-153445000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr2:153440400-153442400	Weak transcription	HMEC	breast
46	chr2:153440400-153445000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:153440600-153442200	Weak transcription	A549	lung
48	chr2:153440600-153442400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr2:153440600-153442800	Enhancers	K562	blood
50	chr2:153440600-153443600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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