Variant report

Variant	rs61748721
Chromosome Location	chr15:41815063-41815064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41815053-41816353	HepG2	liver:	n/a	n/a
2	POLR2A	chr15:41814960-41815156	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr15:41814961-41815817	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:41812182..41819156-chr15:41830894..41838104,9	K562	blood:
2	chr15:41814934..41817190-chr15:41828140..41829699,2	MCF-7	breast:
3	chr15:41784591..41787497-chr15:41813598..41816388,3	K562	blood:

Variant related genes	Relation type
RPAP1	TF binding region
ENSG00000137825	Chromatin interaction
ENSG00000103932	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10152274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv471241	chr15:41783814-41820200	Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv904112	chr15:41806658-41836234	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41801800-41819000	Weak transcription	Hela-S3	cervix
2	chr15:41806200-41815400	Weak transcription	NHDF-Ad	bronchial
3	chr15:41806200-41820400	Weak transcription	HSMM	muscle
4	chr15:41806200-41822600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:41806400-41815600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:41806400-41818600	Weak transcription	Primary B cells from cord blood	blood
7	chr15:41806400-41835200	Weak transcription	Right Atrium	heart
8	chr15:41806600-41817000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:41806600-41818800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:41806600-41818800	Weak transcription	GM12878-XiMat	blood
11	chr15:41806600-41819000	Weak transcription	HUVEC	blood vessel
12	chr15:41806600-41819200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:41806600-41824600	Weak transcription	Fetal Kidney	kidney
14	chr15:41806600-41835200	Weak transcription	Fetal Heart	heart
15	chr15:41806800-41818200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:41806800-41818400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:41806800-41818600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr15:41806800-41818800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:41806800-41818800	Weak transcription	Stomach Mucosa	stomach
20	chr15:41806800-41822400	Weak transcription	NH-A	brain
21	chr15:41807000-41816400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:41807200-41819400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:41807200-41835600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:41808000-41829600	Strong transcription	Fetal Stomach	stomach
25	chr15:41808200-41818200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:41808200-41820600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:41808600-41823000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:41808600-41829200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:41808600-41829600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:41808600-41835400	Weak transcription	Fetal Brain Male	brain
31	chr15:41808800-41829600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:41809000-41829400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:41809000-41829400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:41809600-41829200	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:41809600-41829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:41809800-41818600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:41810000-41815800	Weak transcription	Colon Smooth Muscle	Colon
38	chr15:41810000-41820400	Weak transcription	Small Intestine	intestine
39	chr15:41810200-41818400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:41810200-41819000	Weak transcription	HSMMtube	muscle
41	chr15:41810400-41817000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:41810400-41818600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:41810400-41819400	Weak transcription	Psoas Muscle	Psoas
44	chr15:41810600-41815400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:41810600-41815400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr15:41810600-41815400	Weak transcription	Brain Angular Gyrus	brain
47	chr15:41810600-41818600	Weak transcription	HMEC	breast
48	chr15:41810600-41818800	Weak transcription	K562	blood
49	chr15:41811400-41818600	Weak transcription	HepG2	liver
50	chr15:41811400-41819200	Weak transcription	A549	lung

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