Variant report

Variant	rs61751620
Chromosome Location	chr1:151015564-151015565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150974834..150982774-chr1:151014282..151023779,19	MCF-7	breast:
2	chr1:151009507..151012297-chr1:151015405..151017182,2	K562	blood:

Variant related genes	Relation type
ENSG00000143363	Chromatin interaction
ENSG00000163141	Chromatin interaction
ENSG00000143409	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10305739	1.00[AFR][1000 genomes]
rs10305742	1.00[AFR][1000 genomes]
rs267731	1.00[AFR][1000 genomes]
rs525676	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150997600-151019800	Weak transcription	HUVEC	blood vessel
2	chr1:150997800-151019800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:151000000-151019800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:151000000-151019800	Weak transcription	NHLF	lung
5	chr1:151000200-151019800	Weak transcription	Small Intestine	intestine
6	chr1:151003800-151019800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:151004400-151019800	Weak transcription	Fetal Kidney	kidney
8	chr1:151006800-151019800	Weak transcription	Gastric	stomach
9	chr1:151006800-151019800	Weak transcription	HepG2	liver
10	chr1:151007000-151019000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr1:151007000-151019600	Weak transcription	Colonic Mucosa	Colon
12	chr1:151007200-151019800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:151007200-151019800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:151007400-151019600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:151007400-151019800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:151007400-151019800	Weak transcription	Brain Angular Gyrus	brain
17	chr1:151007400-151019800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:151007600-151019600	Weak transcription	Fetal Brain Male	brain
19	chr1:151007800-151015600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:151007800-151019000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:151007800-151019000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:151007800-151019200	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:151008000-151015600	Weak transcription	Brain Substantia Nigra	brain
24	chr1:151008000-151018000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr1:151008000-151018000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr1:151008000-151019000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:151008000-151019200	Weak transcription	Primary B cells from cord blood	blood
28	chr1:151008000-151019200	Weak transcription	Dnd41	blood
29	chr1:151008000-151019400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:151008000-151019600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:151008000-151019600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:151008000-151019600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr1:151008000-151019600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr1:151008000-151019600	Weak transcription	A549	lung
35	chr1:151008000-151019600	Weak transcription	Osteobl	bone
36	chr1:151008000-151019800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:151008000-151019800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:151008000-151019800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:151008000-151019800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:151008000-151019800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr1:151008000-151019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr1:151008000-151019800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:151008000-151019800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:151008000-151019800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:151008000-151019800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr1:151008000-151019800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr1:151008000-151019800	Weak transcription	Brain Germinal Matrix	brain
48	chr1:151008000-151019800	Weak transcription	Brain Hippocampus Middle	brain
49	chr1:151008000-151019800	Weak transcription	Fetal Lung	lung
50	chr1:151008000-151019800	Weak transcription	Ovary	ovary

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