Variant report

Variant	rs61751725
Chromosome Location	chr3:141583500-141583501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16851874	1.00[AMR][1000 genomes]
rs2115936	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4582027	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59905603	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72984402	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv965218	chr3:141580574-141584429	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141579800-141583800	Weak transcription	Lung	lung
2	chr3:141580000-141584000	Weak transcription	Right Ventricle	heart
3	chr3:141580800-141588600	Weak transcription	HUVEC	blood vessel
4	chr3:141581800-141585400	Weak transcription	K562	blood
5	chr3:141583000-141583600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr3:141583000-141584200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:141583200-141583800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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